MINT: a multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms (Q36292006)

13 August 2017

MINT: a multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms (English)

1 reference

13 August 2017

0 references

1 reference

multivariate statistics

1 reference

5

Kim-Anh Lê Cao

0 references

author name string

Florian Rohart

1

1 reference

13 August 2017

Aida Eslami

2

1 reference

13 August 2017

Nicholas Matigian

3

1 reference

13 August 2017

Stéphanie Bougeard

4

1 reference

13 August 2017

Kim-Anh Lê Cao

5

1 reference

13 August 2017

27 February 2017

1 reference

13 August 2017

1 reference

13 August 2017

18

1 reference

13 August 2017

1

1 reference

13 August 2017

128

1 reference

https://scigraph.springernature.com/pub.10.1186/s12859-017-1553-8

13 August 2017

0 references

cites work

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A molecular classification of human mesenchymal stromal cells

30 September 2017

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Combining location-and-scale batch effect adjustment with data cleaning by latent factor adjustment

30 September 2017

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Combined transcriptome studies identify AFF3 as a mediator of the oncogenic effects of β-catenin in adrenocortical carcinoma

30 September 2017

1 reference

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LIN28: roles and regulation in development and beyond

30 September 2017

1 reference

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Reorganization of metastamiRs in the evolution of metastatic aggressive neuroblastoma cells

30 September 2017

1 reference

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TFF3 is a valuable predictive biomarker of endocrine response in metastatic breast cancer

30 September 2017

1 reference

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AGR3 in breast cancer: prognostic impact and suitable serum-based biomarker for early cancer detection

30 September 2017

1 reference

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Robust meta-analysis of gene expression using the elastic net.

30 September 2017

1 reference

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C6ORF97-ESR1 breast cancer susceptibility locus: influence on progression and survival in breast cancer patients.

30 September 2017

1 reference

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A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

30 September 2017

1 reference

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CAR expression in human embryos and hESC illustrates its role in pluripotency and tight junctions.

30 September 2017

1 reference

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Non-invasive separation of alcoholic and non-alcoholic liver disease with predictive modeling

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

XBP1 promotes triple-negative breast cancer by controlling the HIF1α pathway

30 September 2017

1 reference

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YuGene: a simple approach to scale gene expression data derived from different platforms for integrated analyses

30 September 2017

1 reference

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Interrogating differences in expression of targeted gene sets to predict breast cancer outcome

30 September 2017

1 reference

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Variability in the generation of induced pluripotent stem cells: importance for disease modeling

30 September 2017

1 reference

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Comprehensive molecular portraits of human breast tumours

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Batch effect removal methods for microarray gene expression data integration: a survey

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Evidence for premature aging due to oxidative stress in iPSCs from Cockayne syndrome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Concise review: Induced pluripotent stem cells versus embryonic stem cells: close enough or yet too far apart?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Using control genes to correct for unwanted variation in microarray data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Human induced pluripotent stem cells derived under feeder-free conditions display unique cell cycle and DNA replication gene profiles

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Treatment of batch in the detection, calibration, and quantification of immunoassays in large-scale epidemiologic studies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

MYB transcriptionally regulates the miR-155 host gene in chronic lymphocytic leukemia

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Efficient generation of transgene-free induced pluripotent stem cells from normal and neoplastic bone marrow and cord blood mononuclear cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

A model for neural development and treatment of Rett syndrome using human induced pluripotent stem cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Correction for hidden confounders in the genetic analysis of gene expression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Highly efficient generation of human hepatocyte-like cells from induced pluripotent stem cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Generation of human induced pluripotent stem cells by direct delivery of reprogramming proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Human induced pluripotent stem cells free of vector and transgene sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Supervised risk predictor of breast cancer based on intrinsic subtypes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Induced pluripotent stem cells from a spinal muscular atrophy patient

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets - improving meta-analysis and prediction of prognosis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

A high-efficiency system for the generation and study of human induced pluripotent stem cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Finding common genes in multiple cancer types through meta-analysis of microarray experiments: a rank aggregation approach

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Induced pluripotent stem cell lines derived from human somatic cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Gata-3 is an essential regulator of mammary-gland morphogenesis and luminal-cell differentiation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

GATA-3 maintains the differentiation of the luminal cell fate in the mammary gland

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Adjusting batch effects in microarray expression data using empirical Bayes methods

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Gene selection and classification of microarray data using random forest.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Specific knockdown of Oct4 and beta2-microglobulin expression by RNA interference in human embryonic stem cells and embryonic carcinoma cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

A POU-domain transcription factor in early stem cells and germ cells of the mammalian embryo

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

New type of POU domain in germ line-specific protein Oct-4

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Induction of pluripotency in human somatic cells via a transient state resembling primitive streak-like mesendoderm

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Stemformatics: visualisation and sharing of stem cell gene expression.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

GATA3 expression in advanced breast cancer: prognostic value and organ-specific relapse.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Gender-associated expression of tumor markers and a small gene set in breast carcinoma.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

GATA3 mutations define a unique subtype of luminal-like breast cancer with improved survival.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Integration-free induced pluripotent stem cells model genetic and neural developmental features of down syndrome etiology.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Lab-specific gene expression signatures in pluripotent stem cells

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Clinical implications of gene dosage and gene expression patterns in diploid breast carcinoma.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5327533

Identifying Important Risk Factors for Survival in Kidney Graft Failure Patients Using Random Survival Forests

22 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-017-1553-8

Gene Selection for Cancer Classification using Support Vector Machines

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-017-1553-8

10.1186/S12859-017-1553-8

21 January 2018

Identifiers

DOI

1 reference

journals/bmcbi/RohartEMBC17

13 August 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1084249930

0 references

Fatcat ID

release_q2u3a4f6ubh5tihuhlgpupq5me

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/q2u3a4f6ubh5tihuhlgpupq5me

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

13 August 2017

1 reference