Comprehensive Small RNA-Seq of Adeno-Associated Virus (AAV)-Infected Human Cells Detects Patterns of Novel, Non-Coding AAV RNAs in the Absence of Cellular miRNA Regulation (Q36127799)

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English	Comprehensive Small RNA-Seq of Adeno-Associated Virus (AAV)-Infected Human Cells Detects Patterns of Novel, Non-Coding AAV RNAs in the Absence of Cellular miRNA Regulation	scientific article

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scholarly article

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Europe PubMed Central

12 August 2017

Comprehensive Small RNA-Seq of Adeno-Associated Virus (AAV)-Infected Human Cells Detects Patterns of Novel, Non-Coding AAV RNAs in the Absence of Cellular miRNA Regulation (English)

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Europe PubMed Central

12 August 2017

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Andreas Gogol-Döring

3

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Andreas Gogol-Döring

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Europe PubMed Central

12 August 2017

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Catrin Stutika

1

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Europe PubMed Central

12 August 2017

Mario Mietzsch

2

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Europe PubMed Central

12 August 2017

Stefan Weger

4

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Europe PubMed Central

12 August 2017

Madlen Sohn

5

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Europe PubMed Central

12 August 2017

Wei Chen

6

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Europe PubMed Central

12 August 2017

Regine Heilbronn

7

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Europe PubMed Central

12 August 2017

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9 September 2016

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Europe PubMed Central

12 August 2017

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Europe PubMed Central

12 August 2017

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12 August 2017

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12 August 2017

e0161454

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Europe PubMed Central

12 August 2017

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Creative Commons Attribution 4.0 International

9 September 2016

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April 2022 Public Data File from Crossref

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1 reference

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1 reference

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1 reference

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Productive life cycle of adeno-associated virus serotype 2 in the complete absence of a conventional polyadenylation signal

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Differential adeno-associated virus serotype-specific interaction patterns with synthetic heparins and other glycans

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1 reference

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1 reference

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1 reference

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1 reference

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A novel miRNA produced during lytic HSV-1 infection is important for efficient replication in tissue culture

1 reference

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Promoter-associated RNAs and promoter-targeted RNAs

1 reference

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Roles of E4orf6 and VA I RNA in adenovirus-mediated stimulation of human parvovirus B19 DNA replication and structural gene expression

1 reference

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1 reference

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Small RNAs derived from longer non-coding RNAs

1 reference

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1 reference

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1 reference

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Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2.

1 reference

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1 reference

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Adenovirus VA RNA-derived miRNAs target cellular genes involved in cell growth, gene expression and DNA repair

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Adenovirus virus-associated RNA is processed to functional interfering RNAs involved in virus production

1 reference

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Suppression of RNA interference by adenovirus virus-associated RNA.

1 reference

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MicroRNA biogenesis: coordinated cropping and dicing

1 reference

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1 reference

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2 references

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1 reference

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1 reference

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DNA helicase-mediated packaging of adeno-associated virus type 2 genomes into preformed capsids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

2 October 2017

Concatamerization of adeno-associated virus circular genomes occurs through intermolecular recombination.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

2 October 2017

Rep-mediated nicking of the adeno-associated virus origin requires two biochemical activities, DNA helicase activity and transesterification.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

2 October 2017

Adeno-associated virus type 2 DNA replication in vivo: mutation analyses of the D sequence in viral inverted terminal repeats.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

2 October 2017

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

2 October 2017

Second-strand synthesis is a rate-limiting step for efficient transduction by recombinant adeno-associated virus vectors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

2 October 2017

Rescue and replication of adeno-associated virus type 2 as well as vector DNA sequences from recombinant plasmids containing deletions in the viral inverted terminal repeats: selective encapsidation of viral genomes in progeny virions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

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Human herpesvirus 6 (HHV-6) is a helper virus for adeno-associated virus type 2 (AAV-2) and the AAV-2 rep gene homologue in HHV-6 can mediate AAV-2 DNA replication and regulate gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

2 October 2017

Nucleotide sequence and organization of the adeno-associated virus 2 genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

2 October 2017

Isolation of adenovirus-associated viruses from man.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

2 October 2017

The adeno-associated virus rep gene suppresses herpes simplex virus-induced DNA amplification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

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Site-specific integration by adeno-associated virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

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Human cytomegalovirus completely helps adeno-associated virus replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

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Origin and termination of adeno-associated virus DNA replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

2 July 2018

Tiny RNAs associated with transcription start sites in animals.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

23 September 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5017669

23 September 2018

Improved Northern blot detection of small RNAs using EDC crosslinking and DNA/LNA probes

1 reference

https://pubmed.ncbi.nlm.nih.gov/27611072

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The properties and functions of virus encoded microRNA, siRNA, and other small noncoding RNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/27611072

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of proteins, helper dependence, and seroepidemiology of a new human parvovirus

1 reference

https://pubmed.ncbi.nlm.nih.gov/27611072

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0161454

1 reference

Europe PubMed Central

12 August 2017

2016PLoSO..1161454S

0 references

1 reference

Europe PubMed Central

12 August 2017

1 reference

Europe PubMed Central

12 August 2017

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