Single Nucleotide Polymorphism Discovery in Bovine Pituitary Gland Using RNA-Seq Technology (Q36126095)

12 August 2017

Single Nucleotide Polymorphism Discovery in Bovine Pituitary Gland Using RNA-Seq Technology (English)

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single-nucleotide polymorphism

12 August 2017

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3

Haja N Kadarmideen

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Marcin Sikora

Marcin Sikora

6

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Mariusz Pierzchała

Mariusz Pierzchała

9

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Horbańczuk Jarosław Olav

Jarosław Horbańczuk

10

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Agnieszka Szostak

Agnieszka Szostak

11

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Leyland Fraser

Leyland Fraser

15

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Przemysław Sobiech

16

Przemysław Sobiech

1 reference

12 August 2017

8

Tomasz Grzybowski

1 reference

12 August 2017

13

Lech Zwierzchowski

1 reference

12 August 2017

14

Urszula Czarnik

1 reference

12 August 2017

Chandra Shekhar Pareek

1

1 reference

12 August 2017

Rafał Smoczyński

2

1 reference

12 August 2017

Piotr Dziuba

4

1 reference

12 August 2017

Paweł Błaszczyk

5

1 reference

12 August 2017

Paulina Walendzik

7

1 reference

12 August 2017

Magdalena Ogluszka

12

1 reference

12 August 2017

Krzysztof Wąsowicz

17

1 reference

12 August 2017

Brian Gelfand

18

1 reference

12 August 2017

Yaping Feng

19

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12 August 2017

Dibyendu Kumar

20

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12 August 2017

language of work or name

English

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publication date

8 September 2016

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12 August 2017

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12 August 2017

11

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12 August 2017

9

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12 August 2017

e0161370

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Creative Commons CC0 License

12 August 2017

start time

8 September 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

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describes a project that uses

1 reference

Developmental progress and current status of the Animal QTLdb

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

HTSeq--a Python framework to work with high-throughput sequencing data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Multi-tissue omics analyses reveal molecular regulatory networks for puberty in composite beef cattle

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Characterization of transcriptional complexity during adipose tissue development in bovines of different ages and sexes.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

RNA-Seq technology and its application in fish transcriptomics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Characterization of transcriptional complexity during longissimus muscle development in bovines using high-throughput sequencing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

RNA-seq analysis of single bovine blastocysts

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Genome wide SNP discovery in flax through next generation sequencing of reduced representation libraries

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Current status and future perspectives for sequencing livestock genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Gene network analyses of first service conception in Brangus heifers: use of genome and trait associations, hypothalamic-transcriptome information, and transcription factors.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Quantification of Transcriptome Responses of the Rumen Epithelium to Butyrate Infusion using RNA-seq Technology

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Estimating the effect of SNP genotype on quantitative traits from pooled DNA samples

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Next generation sequencing has lower sequence coverage and poorer SNP-detection capability in the regulatory regions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Characterization and comparison of the leukocyte transcriptomes of three cattle breeds

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Transcriptional profiling of bovine milk using RNA sequencing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Sequencing technologies and genome sequencing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Genome-wide association and genomic selection in animal breeding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

SNP discovery in the bovine milk transcriptome using RNA-Seq technology

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Massive parallel sequencing in animal genetics: wherefroms and wheretos

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

The Sequence Alignment/Map format and SAMtools

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Fast and accurate short read alignment with Burrows-Wheeler transform

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

The genome sequence of taurine cattle: a window to ruminant biology and evolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Mapping and quantifying mammalian transcriptomes by RNA-Seq

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Highly effective SNP-based association mapping and management of recessive defects in livestock

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Allele-specific expression in the germline of patients with familial pancreatic cancer: an unbiased approach to cancer gene discovery

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Candidate gene identification approach: progress and challenges

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Commercial application of marker- and gene-assisted selection in livestock: strategies and lessons

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Mapping quantitative trait loci controlling milk production in dairy cattle by exploiting progeny testing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate–Phenol–Chloroform Extraction

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Performing the exact test of Hardy-Weinberg proportion for multiple alleles

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Wingless-type MMTV integration site family member 2 (WNT2) gene is associated with resistance to MAP in faecal culture and antibody response in Holstein cattle.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Transcriptome analysis and SNP identification in SCC of horn in (Bos indicus) Indian cattle

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Genome-wide association studies for feedlot and growth traits in cattle.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

Assessment of positional candidate genes myf5 and igf1 for growth on bovine chromosome 5 in commercial lines of Bos taurus

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5015895

A region on BTA14 that includes the positional candidate genes LYPLA1, XKR4 and TMEM68 is associated with feed intake and growth phenotypes in cattle(1)

23 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27606429

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

From genotype to phenotype in bovine functional genomics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27606429

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Association analysis of adiponectin and somatostatin polymorphisms on BTA1 with growth and carcass traits in Angus cattle

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27606429

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

GENEPOP (Version 1.2): Population Genetics Software for Exact Tests and Ecumenicism

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1093/OXFORDJOURNALS.JHERED.A111573

Identifiers

DOI

10.1371/JOURNAL.PONE.0161370

1 reference

12 August 2017

0 references

1 reference

12 August 2017

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