Transcriptomic profiling of gene expression and RNA processing during Leishmania major differentiation (Q35961951)

11 August 2017

Transcriptomic profiling of gene expression and RNA processing during Leishmania major differentiation (English)

1 reference

11 August 2017

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Najib M El-Sayed

10

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author name string

Laura A L Dillon

1

1 reference

11 August 2017

Kwame Okrah

2

1 reference

11 August 2017

V Keith Hughitt

3

1 reference

11 August 2017

Rahul Suresh

4

1 reference

11 August 2017

Yuan Li

5

1 reference

11 August 2017

Maria Cecilia Fernandes

6

1 reference

11 August 2017

A Trey Belew

7

1 reference

11 August 2017

Hector Corrada Bravo

8

1 reference

11 August 2017

David M Mosser

9

1 reference

11 August 2017

language of work or name

English

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publication date

6 July 2015

1 reference

11 August 2017

Nucleic Acids Research

1 reference

11 August 2017

43

1 reference

11 August 2017

14

1 reference

11 August 2017

6799-6813

1 reference

Creative Commons Attribution 4.0 International

11 August 2017

start time

8 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

1 reference

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=4538839

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4538839

inferred from PubMed Central ID database lookup

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2 October 2017

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Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania

2 October 2017

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2 October 2017

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Morphological events during the cell cycle of Leishmania major.

2 October 2017

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The cell cycle of Leishmania: morphogenetic events and their implications for parasite biology

2 October 2017

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A global analysis of C. elegans trans-splicing

2 October 2017

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2 October 2017

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The transcriptome of the human pathogen Trypanosoma brucei at single-nucleotide resolution

2 October 2017

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Tackling the widespread and critical impact of batch effects in high-throughput data

2 October 2017

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The stage-regulated HASPB and SHERP proteins are essential for differentiation of the protozoan parasite Leishmania major in its sand fly vector, Phlebotomus papatasi.

2 October 2017

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Ascorbate peroxidase from Leishmania major controls the virulence of infective stage of promastigotes by regulating oxidative stress.

2 October 2017

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The pre-mRNA splicing machinery of trypanosomes: complex or simplified?

2 October 2017

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Characterization of a Leishmania stage-specific mitochondrial membrane protein that enhances the activity of cytochrome c oxidase and its role in virulence

2 October 2017

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Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites

2 October 2017

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High-throughput sequence analysis of Ciona intestinalis SL trans-spliced mRNAs: alternative expression modes and gene function correlates

2 October 2017

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Convergent origins and rapid evolution of spliced leader trans-splicing in metazoa: insights from the ctenophora and hydrozoa

2 October 2017

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Gene ontology analysis for RNA-seq: accounting for selection bias

2 October 2017

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Comparative expression profiling of Leishmania: modulation in gene expression between species and in different host genetic backgrounds

2 October 2017

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Whole-genome comparative RNA expression profiling of axenic and intracellular amastigote forms of Leishmania infantum

2 October 2017

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2 October 2017

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TopHat: discovering splice junctions with RNA-Seq

2 October 2017

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Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between the two species

2 October 2017

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Simultaneous gene expression profiling in human macrophages infected with Leishmania major parasites using SAGE

2 October 2017

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Comparison of the effects of Leishmania major or Leishmania donovani infection on macrophage gene expression

2 October 2017

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Post-transcriptional regulation of gene expression in trypanosomes and leishmanias

2 October 2017

1 reference

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Global gene expression in Leishmania.

2 October 2017

1 reference

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Comparative genomic analysis of three Leishmania species that cause diverse human disease

2 October 2017

1 reference

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Spliced leader RNA trans-splicing in dinoflagellates

2 October 2017

1 reference

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Analysis of the Leishmania donovani transcriptome reveals an ordered progression of transient and permanent changes in gene expression during differentiation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

A Leishmania amazonensis ZIP family iron transporter is essential for parasite replication within macrophage phagolysosomes.

2 October 2017

1 reference

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

2 October 2017

1 reference

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The genome of the kinetoplastid parasite, Leishmania major

2 October 2017

1 reference

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The Genome of the African Trypanosome Trypanosoma brucei

2 October 2017

1 reference

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The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease

2 October 2017

1 reference

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Comparative genomics of trypanosomatid parasitic protozoa

2 October 2017

1 reference

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Spliced-leader RNA trans splicing in a chordate, Oikopleura dioica, with a compact genome

2 October 2017

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2 October 2017

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Expression profiling using random genomic DNA microarrays identifies differentially expressed genes associated with three major developmental stages of the protozoan parasite Leishmania major

2 October 2017

1 reference

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Evaluation of differential gene expression in Leishmania major Friedlin procyclics and metacyclics using DNA microarray analysis

2 October 2017

1 reference

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A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

2 October 2017

1 reference

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Regulation of GP63 mRNA stability in promastigotes of virulent and attenuated Leishmania chagasi

2 October 2017

1 reference

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mRNA 5'-leader trans-splicing in the chordates

2 October 2017

1 reference

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The unusual gene organization of Leishmania major chromosome 1 may reflect novel transcription processes

2 October 2017

1 reference

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A new twist in trypanosome RNA metabolism: cis-splicing of pre-mRNA.

2 October 2017

1 reference

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Leishmania major Friedlin chromosome 1 has an unusual distribution of protein-coding genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Temporal order of RNA-processing reactions in trypanosomes: rapid trans splicing precedes polyadenylation of newly synthesized tubulin transcripts

2 October 2017

1 reference

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Scanning and competition between AGs are involved in 3' splice site selection in mammalian introns

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Metacyclogenesis is a major determinant of Leishmania promastigote virulence and attenuation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Metacyclogenesis in Leishmania promastigotes

2 October 2017

1 reference

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Structure and regulation of histone H2B mRNAs from Leishmania enriettii

2 October 2017

1 reference

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Requirement of a polypyrimidine tract for trans-splicing in trypanosomes: discriminating the PARP promoter from the immediately adjacent 3' splice acceptor site

2 October 2017

1 reference

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Trans-splicing and operons in metazoans: translational control in maternally regulated development and recovery from growth arrest.

2 October 2017

1 reference

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Systematic study of sequence motifs for RNA trans splicing in Trypanosoma brucei

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Cell-cycle-dependent translation of histone mRNAs is the key control point for regulation of histone biosynthesis in Leishmania infantum

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Characterization of a differentially expressed protein that shows an unusual localization to intracellular membranes in Leishmania major

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Differential expression of Leishmania major beta-tubulin genes during the acquisition of promastigote infectivity.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Characterisation and expression of a stage-regulated gene of Leishmania major

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

The developmental expression of Leishmania donovani A2 amastigote-specific genes is post-transcriptionally mediated and involves elements located in the 3'-untranslated region

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Expression of a hydrophilic surface protein in infective stages of Leishmania major

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Identification of an infective stage of Leishmania promastigotes.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Scanning from an independently specified branch point defines the 3' splice site of mammalian introns

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Downregulation of histone H4 gene transcription during postnatal development in transgenic mice and at the onset of differentiation in transgenically derived calvarial osteoblast cultures

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Cyclin-dependent kinases and cell-cycle transitions: does one fit all?

11 July 2018

1 reference

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Spliced leader RNA-mediated trans-splicing in a dinoflagellate, Karenia brevis.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Inhibitors of casein kinase 1 block the growth of Leishmania major promastigotes in vitro.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

The translational efficiencies of the two Leishmania infantum HSP70 mRNAs, differing in their 3'-untranslated regions, are affected by shifts in the temperature of growth through different mechanisms

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Transcription of Leishmania major Friedlin chromosome 1 initiates in both directions within a single region.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Developmental regulation of heat shock protein 83 in Leishmania. 3' processing and mRNA stability control transcript abundance, and translation id directed by a determinant in the 3'-untranslated region.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Lipophosphoglycan (LPG) and the identification of virulence genes in the protozoan parasite Leishmania

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

A trans-spliced leader sequence on actin mRNA in C. elegans.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4538839

Amastin mRNA abundance in Trypanosoma cruzi is controlled by a 3'-untranslated region position-dependent cis-element and an untranslated region-binding protein

24 September 2018

1 reference

12 December 2020

Conserved nucleotides surrounding the trans-splicing acceptor site and the translation initiation codon in Leishmania genes

1 reference

12 December 2020

A lipophosphoglycan-independent method for isolation of infective Leishmania metacyclic promastigotes by density gradient centrifugation

1 reference

12 December 2020

Expression profiling by whole-genome interspecies microarray hybridization reveals differential gene expression in procyclic promastigotes, lesion-derived amastigotes, and axenic amastigotes in Leishmania mexicana

1 reference

12 December 2020

A common pyrimidine-rich motif governs trans-splicing and polyadenylation of tubulin polycistronic pre-mRNA in trypanosomes

1 reference

12 December 2020

Coupling of poly(A) site selection and trans-splicing in Leishmania

1 reference

12 December 2020

Evidence for trans splicing in trypanosomes

1 reference

12 December 2020

Control of cell cycle regulated histone genes during proliferation and differentiation

1 reference

12 December 2020

Identification of a putative regulatory element in the 3'-untranslated region that controls expression of HSP70 in Leishmania infantum

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKV656

1 reference

11 August 2017

1 reference

11 August 2017

1 reference