Comparative Developmental Transcriptomics Reveals Rewiring of a Highly Conserved Gene Regulatory Network during a Major Life History Switch in the Sea Urchin Genus Heliocidaris (Q35946285)

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English	Comparative Developmental Transcriptomics Reveals Rewiring of a Highly Conserved Gene Regulatory Network during a Major Life History Switch in the Sea Urchin Genus Heliocidaris	scientific article

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scholarly article

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Europe PubMed Central

11 August 2017

Comparative Developmental Transcriptomics Reveals Rewiring of a Highly Conserved Gene Regulatory Network during a Major Life History Switch in the Sea Urchin Genus Heliocidaris (English)

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Europe PubMed Central

11 August 2017

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transcriptomics

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based on heuristic

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Maria Byrne

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Rudolf A Raff

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Europe PubMed Central

11 August 2017

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Gregory A Wray

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Europe PubMed Central

11 August 2017

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Jennifer W Israel

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Europe PubMed Central

11 August 2017

Megan L Martik

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Europe PubMed Central

11 August 2017

Elizabeth C Raff

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Europe PubMed Central

11 August 2017

David R McClay

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Europe PubMed Central

11 August 2017

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4 March 2016

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Europe PubMed Central

11 August 2017

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Europe PubMed Central

11 August 2017

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Europe PubMed Central

11 August 2017

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Europe PubMed Central

11 August 2017

e1002391

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Europe PubMed Central

11 August 2017

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Creative Commons Attribution 4.0 International

4 March 2016

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April 2022 Public Data File from Crossref

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describes a project that uses

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R package WGCNA

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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R package edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Comparative Study of Regulatory Circuits in Two Sea Urchin Species Reveals Tight Control of Timing and High Conservation of Expression Dynamics.

1 reference

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Evolutionary rewiring of gene regulatory network linkages at divergence of the echinoid subclasses

1 reference

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Geometric control of ciliated band regulatory states in the sea urchin embryo

1 reference

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A recurrent regulatory change underlying altered expression and Wnt response of the stickleback armor plates gene EDA.

1 reference

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Evolved tooth gain in sticklebacks is associated with a cis-regulatory allele of Bmp6

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Transcriptomic analysis of the highly derived radial body plan of a sea urchin

1 reference

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Short-range Wnt5 signaling initiates specification of sea urchin posterior ectoderm

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The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network.

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New regulatory circuit controlling spatial and temporal gene expression in the sea urchin embryo oral ectoderm GRN.

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Notch and Nodal control forkhead factor expression in the specification of multipotent progenitors in sea urchin

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Integration of canonical and noncanonical Wnt signaling pathways patterns the neuroectoderm along the anterior-posterior axis of sea urchin embryos

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Gene regulatory control in the sea urchin aboral ectoderm: spatial initiation, signaling inputs, and cell fate lockdown

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Opposing nodal and BMP signals regulate left-right asymmetry in the sea urchin larva

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Development of an embryonic skeletogenic mesenchyme lineage in a sea cucumber reveals the trajectory of change for the evolution of novel structures in echinoderms

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Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis.

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Wnt6 activates endoderm in the sea urchin gene regulatory network

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A gene regulatory network controlling the embryonic specification of endoderm

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Mapping gene expression in two Xenopus species: evolutionary constraints and developmental flexibility.

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Gene expression divergence recapitulates the developmental hourglass model

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Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer

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The endoderm gene regulatory network in sea urchin embryos up to mid-blastula stage

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Comparison of diverse developmental transcriptomes reveals that coexpression of gene neighbors is not evolutionarily conserved

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The sea urchin animal pole domain is a Six3-dependent neurogenic patterning center

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A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo

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Gene regulatory network interactions in sea urchin endomesoderm induction

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Global regulatory logic for specification of an embryonic cell lineage

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Gene regulatory networks and the evolution of animal body plans

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2 October 2017

The dorsoventral axis is specified prior to first cleavage in the direct developing sea urchin Heliocidaris erythrogramma

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27 July 2018

Identification and developmental expression of new biomineralization proteins in the sea urchin Strongylocentrotus purpuratus

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Specification of cell fate in the sea urchin embryo: summary and some proposed mechanisms

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Mechanisms of evolutionary changes in timing, spatial expression, and mRNA processing in the msp130 gene in a direct-developing sea urchin, Heliocidaris erythrogramma.

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27 July 2018

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27 July 2018

Evolutionary modification of cell lineage in the direct-developing sea urchin Heliocidaris erythrogramma.

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27 July 2018

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27 July 2018

A dynamic regulatory network explains ParaHox gene control of gut patterning in the sea urchin

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24 September 2018

Genome-wide analysis of the skeletogenic gene regulatory network of sea urchins.

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24 September 2018

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24 September 2018

The genomic regulatory control of skeletal morphogenesis in the sea urchin.

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24 September 2018

Regulative deployment of the skeletogenic gene regulatory network during sea urchin development.

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24 September 2018

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24 September 2018

A conserved gene regulatory network subcircuit drives different developmental fates in the vegetal pole of highly divergent echinoderm embryos.

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24 September 2018

Fluorescent in situ hybridization reveals multiple expression domains for SpBrn1/2/4 and identifies a unique ectodermal cell type that co-expresses the ParaHox gene SpLox.

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24 September 2018

Morphogenetic mechanisms of coelom formation in the direct-developing sea urchin Heliocidaris erythrogramma.

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24 September 2018

Nodal expression and heterochrony in the evolution of dorsal-ventral and left-right axes formation in the direct-developing sea urchin Heliocidaris erythrogramma.

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24 September 2018

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24 September 2018

Multi-trait evolution in a cave fish, Astyanax mexicanus

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24 September 2018

Co-option and dissociation in larval origins and evolution: the sea urchin larval gut.

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24 September 2018

FGF signals guide migration of mesenchymal cells, control skeletal morphogenesis [corrected] and regulate gastrulation during sea urchin development.

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24 September 2018

Localized VEGF signaling from ectoderm to mesenchyme cells controls morphogenesis of the sea urchin embryo skeleton.

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24 September 2018

Genetic organization and embryonic expression of the ParaHox genes in the sea urchin S. purpuratus: insights into the relationship between clustering and colinearity.

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24 September 2018

Larval ectoderm, organizational homology, and the origins of evolutionary novelty.

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Expression of Nkx6 genes in the hindbrain and gut of the developing mouse

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24 September 2018

Nuclear beta-catenin-dependent Wnt8 signaling in vegetal cells of the early sea urchin embryo regulates gastrulation and differentiation of endoderm and mesodermal cell lineages.

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24 September 2018

Patterning mechanisms in the evolution of derived developmental life histories: the role of Wnt signaling in axis formation of the direct-developing sea urchin Heliocidaris erythrogramma

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24 September 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4778923

24 September 2018

brachyury Target genes in the early sea urchin embryo isolated by differential macroarray screening

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4778923

24 September 2018

Gene expression and larval evolution: changing roles of distal-less and orthodenticle in echinoderm larvae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4778923

24 September 2018

Depletion of Mab21l1 and Mab21l2 messages in mouse embryo arrests axial turning, and impairs notochord and neural tube differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4778923

24 September 2018

Maternal factors and the evolution of developmental mode: evolution of oogenesis in Heliocidaris erythrogramma.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4778923

24 September 2018

Prox 1 in eye degeneration and sensory organ compensation during development and evolution of the cavefish Astyanax

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4778923

24 September 2018

Homeobox gene Nkx6.1 lies downstream of Nkx2.2 in the major pathway of beta-cell formation in the pancreas.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4778923

24 September 2018

Isolation and characterization of three mRNAs enriched in embryos of the direct-developing sea urchin Heliocidaris erythrogramma: evolution of larval ectoderm.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4778923

24 September 2018

Parallel Evolution of Nonfeeding Larvae in Echinoids

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1002391

21 January 2018

A neutral model of transcriptome evolution

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1002391

21 January 2018

Apical organs in echinoderm larvae: insights into larval evolution in the Ambulacraria

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1002391

21 January 2018

Spatial expression of Hox cluster genes in the ontogeny of a sea urchin

1 reference

https://pubmed.ncbi.nlm.nih.gov/26943850

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Incongruent expression profiles between human and mouse orthologous genes suggest widespread neutral evolution of transcription control

1 reference

https://pubmed.ncbi.nlm.nih.gov/26943850

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dissociation of expression patterns of homeodomain transcription factors in the evolution of developmental mode in the sea urchins Heliocidaris tuberculata and H. erythrogramma

1 reference

https://pubmed.ncbi.nlm.nih.gov/26943850

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Novel origins of lineage founder cells in the direct-developing sea urchin Heliocidaris erythrogramma

1 reference

https://pubmed.ncbi.nlm.nih.gov/26943850

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RAPID EVOLUTION OF GASTRULATION MECHANISMS IN A SEA URCHIN WITH LECITHOTROPHIC LARVAE

1 reference

https://pubmed.ncbi.nlm.nih.gov/26943850

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Larval spicules, cilia, and symmetry as remnants of indirect development in the direct developing sea urchin Heliocidaris erythrogramma

1 reference

https://pubmed.ncbi.nlm.nih.gov/26943850

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A clonal analysis of secondary mesenchyme cell fates in the sea urchin embryo

1 reference

https://pubmed.ncbi.nlm.nih.gov/26943850

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A fate map of the vegetal plate of the sea urchin (Lytechinus variegatus) mesenchyme blastula

1 reference

https://pubmed.ncbi.nlm.nih.gov/26943850

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PBIO.1002391

1 reference

Europe PubMed Central

11 August 2017

1 reference

Europe PubMed Central

11 August 2017

1 reference

Europe PubMed Central

11 August 2017

ResearchGate publication ID

0 references

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