RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications (Q35755293)

10 August 2017

RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications (English)

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10 August 2017

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10 August 2017

Udo Gowik

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Rowan F Sage

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object named as

Rowan F Sage

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10 August 2017

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Julian M Hibberd

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10 August 2017

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Sarah Covshoff

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10 August 2017

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Ming-Ju Amy Lyu

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10 August 2017

Steve Kelly

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10 August 2017

Julia Mallmann

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10 August 2017

Peter Westhoff

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10 August 2017

Matt Stata

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10 August 2017

Haorong Lu

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10 August 2017

Xiaofeng Wei

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10 August 2017

Xin-Guang Zhu

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10 August 2017

18 June 2015

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10 August 2017

BMC Evolutionary Biology

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https://scigraph.springernature.com/pub.10.1186/s12862-015-0399-9

22 June 2019

exact match

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cites work

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Phylotranscriptomics: saturated third codon positions radically influence the estimation of trees based on next-gen data

2 October 2017

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Phenotypic landscape inference reveals multiple evolutionary paths to C4 photosynthesis

2 October 2017

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Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes

2 October 2017

1 reference

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Genome-scale coestimation of species and gene trees.

2 October 2017

1 reference

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Integrating multi-origin expression data improves the resolution of deep phylogeny of ray-finned fish (Actinopterygii).

2 October 2017

1 reference

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Photorespiration and the evolution of C4 photosynthesis

2 October 2017

1 reference

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MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

2 October 2017

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PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

2 October 2017

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C4 cycles: past, present, and future research on C4 photosynthesis

2 October 2017

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Data partitions, Bayesian analysis and phylogeny of the zygomycetous fungal family Mortierellaceae, inferred from nuclear ribosomal DNA sequences

2 October 2017

1 reference

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What can next generation sequencing do for you? Next generation sequencing as a valuable tool in plant research.

2 October 2017

1 reference

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Leveraging skewed transcript abundance by RNA-Seq to increase the genomic depth of the tree of life

2 October 2017

1 reference

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Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics

2 October 2017

1 reference

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uShuffle: a useful tool for shuffling biological sequences while preserving the k-let counts

2 October 2017

1 reference

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Using C4 photosynthesis to increase the yield of rice-rationale and feasibility

2 October 2017

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TimeTree: a public knowledge-base of divergence times among organisms

2 October 2017

1 reference

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

2 October 2017

1 reference

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OrfPredictor: predicting protein-coding regions in EST-derived sequences

2 October 2017

1 reference

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Duplicated genes evolve slower than singletons despite the initial rate increase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

BLAT—The BLAST-Like Alignment Tool

2 October 2017

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Ontogenetic derivation and cell differentiation in photosynthetic tissues of C3 and C4 Cyperaceae

2 October 2017

1 reference

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Effects of low atmospheric CO(2) on plants: more than a thing of the past

2 October 2017

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

Intraspecific and interspecific variation in 5S RNA genes are decoupled in diploid wheat relatives

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

The C4-dicarboxylic acid pathway of photosynthesis. Identification of intermediates and products and quantitative evidence for the route of carbon flow

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

Differential accumulation of plastid transcripts encoding photosystem II components in the mesophyll and bundle-sheath cells of monocotyledonous NADP-malic enzyme-type C4 plants.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

Initial events during the evolution of C4 photosynthesis in C3 species of Flaveria

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

Evolution of C4 photosynthesis in the genus flaveria: establishment of a photorespiratory CO2 pump.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

Predicting C4 photosynthesis evolution: modular, individually adaptive steps on a Mount Fuji fitness landscape

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

Modeling the evolution of C4 photosynthesis

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

Next-generation phylogenomics using a Target Restricted Assembly Method

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

Evolution of C4 photosynthesis in the genus Flaveria: how many and which genes does it take to make C4?

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

Exploiting the engine of C(4) photosynthesis.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

Codon usage patterns distort phylogenies from or of DNA sequences

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

Phylogeny of Flaveria (Asteraceae) and inference of C4 photosynthesis evolution

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

Water-use efficiency and nitrogen-use efficiency of C(3) -C(4) intermediate species of Flaveria Juss. (Asteraceae).

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

The functional significance of C3-C4 intermediate traits in Heliotropium L. (Boraginaceae): gas exchange perspectives.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

Photosynthesis in Flaveria brownii, a C(4)-Like Species: Leaf Anatomy, Characteristics of CO(2) Exchange, Compartmentation of Photosynthetic Enzymes, and Metabolism of CO(2).

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

cis-Regulatory elements for mesophyll-specific gene expression in the C4 plant Flaveria trinervia, the promoter of the C4 phosphoenolpyruvate carboxylase gene

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

Systematics of Flaveria (Flaveriinae-Asteraceae)

25 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12862-015-0399-9

An mRNA blueprint for C4 photosynthesis derived from comparative transcriptomics of closely related C3 and C4 species

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4472175

Key innovations in the evolution of Kranz anatomy and C4 vein pattern in Flaveria (Asteraceae)

25 September 2018

1 reference

12 December 2020

Degree of C(4) Photosynthesis in C(4) and C(3)-C(4)Flaveria Species and Their Hybrids : II. Inhibition of Apparent Photosynthesis by a Phosphoenolpyruvate Carboxylase Inhibitor

1 reference

12 December 2020

Photosynthetic and photorespiratory characteristics of flaveria species

1 reference

12 December 2020

Plant DNA sequencing for phylogenetic analyses: from plants to sequences

1 reference

12 December 2020

Photosynthesis of F(1) Hybrids between C(4) and C(3)-C(4) Species of Flaveria

1 reference

12 December 2020

How can third codon positions outperform first and second codon positions in phylogenetic inference? An empirical example from the seed plants

1 reference

12 December 2020

Co-function of C3-and C 4-photosynthetic pathways in C3, C 4 and C 3-C 4 intermediate Flaveria species

1 reference

12 December 2020

10.1186/S12862-015-0399-9

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10 August 2017

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10 August 2017

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