RNA-seq analysis of Macrobrachium rosenbergii hepatopancreas in response to Vibrio parahaemolyticus infection. (Q35544706)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25922623%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

title

RNA-seq analysis of Macrobrachium rosenbergii hepatopancreas in response to Vibrio parahaemolyticus infection (English)

1 reference

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6 March 2020

1 reference

1 reference

Vibrio parahaemolyticus

object named as

Vibrio parahaemolyticus

1 reference

Macrobrachium rosenbergii

inferred from title

object named as

Macrobrachium rosenbergii

1 reference

1 reference

6

1 reference

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6 March 2020

Jun Wang

7

1 reference

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6 March 2020

5

Kwai Lin Thong

1 reference

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6 March 2020

author name string

Rama Rao

1

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6 March 2020

Ya Bing Zhu

2

1 reference

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6 March 2020

Tahereh Alinejad

3

1 reference

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6 March 2020

Suma Tiruvayipati

4

1 reference

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6 March 2020

Subha Bhassu

8

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6 March 2020

publication date

14 March 2015

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6 March 2020

1 reference

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6 March 2020

volume

7

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6 March 2020

page(s)

6

1 reference

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Creative Commons Attribution 4.0 International

6 March 2020

copyright license

start time

14 March 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/s13099-015-0052-6

0 references

cites work

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Transcriptome analysis of Pacific white shrimp (Litopenaeus vannamei) hepatopancreas in response to Taura syndrome Virus (TSV) experimental infection

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Immune role of MrNFκBI-α, an IκB family member characterized in prawn M. rosenbergii.

12 July 2018

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Pattern recognition protein binds to lipopolysaccharide and β-1,3-glucan and activates shrimp prophenoloxidase system

12 July 2018

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12 July 2018

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Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

12 July 2018

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Two types of calmodulin play different roles in Pacific white shrimp (Litopenaeus vannamei) defenses against Vibrio parahaemolyticus and WSSV infection

12 July 2018

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Using the Basic Local Alignment Search Tool (BLAST)

12 July 2018

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Pathogen recognition by the innate immune system

12 July 2018

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De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification

12 July 2018

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Viral diseases of the giant fresh water prawn Macrobrachium rosenbergii: a review

12 July 2018

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Protein folding in the cytoplasm and the heat shock response

12 July 2018

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Identification of upregulated immune-related genes in Vibrio harveyi challenged Penaeus monodon postlarvae.

12 July 2018

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Expression and distribution of three heat shock protein genes under heat shock stress and under exposure to Vibrio harveyi in Penaeus monodon

12 July 2018

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A review of the major penaeid shrimp EST studies and the construction of a shrimp transcriptome database based on the ESTs from four penaeid shrimp

12 July 2018

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Microarray analyses of shrimp immune responses.

12 July 2018

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A Dorsal homolog (FcDorsal) in the Chinese shrimp Fenneropenaeus chinensis is responsive to both bacteria and WSSV challenge

12 July 2018

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12 July 2018

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12 July 2018

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Next-generation sequencing.

12 July 2018

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12 July 2018

1 reference

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Molecular cloning and characterization of a heat shock protein 70 gene in swimming crab (Portunus trituberculatus).

12 July 2018

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cDNA cloning, identification, tissue localisation, and transcription profile of a transglutaminase from white shrimp, Litopenaeus vannamei, after infection by Vibrio alginolyticus

12 July 2018

1 reference

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Applications of new sequencing technologies for transcriptome analysis.

12 July 2018

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Next-generation sequencing technologies and their implications for crop genetics and breeding

12 July 2018

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Expression of immune-related genes in the digestive organ of shrimp, Penaeus monodon, after an oral infection by Vibrio harveyi.

12 July 2018

1 reference

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Beta-glucans as immunostimulant in vertebrates and invertebrates.

12 July 2018

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Evolution of life history traits in Asian freshwater prawns of the genus Macrobrachium (Crustacea: Decapoda: Palaemonidae) based on multilocus molecular phylogenetic analysis

12 July 2018

1 reference

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Next-generation DNA sequencing techniques

12 July 2018

1 reference

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Transcriptome profiling using next-generation sequencing

12 July 2018

1 reference

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The effect of Vibrio alginolyticus infection on caspase-3 expression and activity in white shrimp Litopenaeus vannamei

12 July 2018

1 reference

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Analyzing real-time PCR data by the comparative C(T) method

12 July 2018

1 reference

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

12 July 2018

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Membrane-associated stress proteins: more than simply chaperones.

12 July 2018

1 reference

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cDNA cloning, characterization and expression analysis of the antioxidant enzyme gene, catalase, of Chinese shrimp Fenneropenaeus chinensis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

Molecular cloning and characterisation of a pattern recognition protein, lipopolysaccharide and beta-1,3-glucan binding protein (LGBP) from Chinese shrimp Fenneropenaeus chinensis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

Anti-lipopolysaccharide factor in Litopenaeus vannamei (LvALF): a broad spectrum antimicrobial peptide essential for shrimp immunity against bacterial and fungal infection

12 July 2018

1 reference

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Molecular cloning and expression analysis of a heat shock protein (Hsp90) gene from black tiger shrimp (Penaeus monodon).

12 July 2018

1 reference

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Molecular cloning and characterization of a catalase gene from Zhikong scallop Chlamys farreri

12 July 2018

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Molecular cloning of a C-type lectin (LvLT) from the shrimp Litopenaeus vannamei: early gene down-regulation after WSSV infection

12 July 2018

1 reference

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Profiling of differentially expressed genes in hepatopancreas of white spot syndrome virus-resistant shrimp (Litopenaeus vannamei) by suppression subtractive hybridisation

12 July 2018

1 reference

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Insights into the immune transcriptome of the shrimp Litopenaeus vannamei: tissue-specific expression profiles and transcriptomic responses to immune challenge

12 July 2018

1 reference

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Cloning and recombinant expression of a crustin-like gene from Chinese shrimp, Fenneropenaeus chinensis

12 July 2018

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Cell-mediated immunity in arthropods: hematopoiesis, coagulation, melanization and opsonization

12 July 2018

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Pathogen recognition and innate immunity

12 July 2018

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Anti-immunology: evasion of the host immune system by bacterial and viral pathogens

12 July 2018

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Molecular cloning and characterisation of copper/zinc superoxide dismutase (Cu,Zn-SOD) from the giant freshwater prawn Macrobrachium rosenbergii

12 July 2018

1 reference

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Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

12 July 2018

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Cloning and molecular characterization of heat shock cognate 70 from tiger shrimp (Penaeus monodon).

12 July 2018

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Molecular cloning and characterisation of a pattern recognition molecule, lipopolysaccharide- and beta-1,3-glucan binding protein (LGBP) from the white shrimp Litopenaeus vannamei

12 July 2018

1 reference

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Differential gene expression profile in hepatopancreas of WSSV-resistant shrimp (Penaeus japonicus) by suppression subtractive hybridization

12 July 2018

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12 July 2018

Biodiversity of vibrios

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Mitogen-activated protein kinase pathways defend against bacterial pore-forming toxins.

12 July 2018

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Identification of genes involved in the response of haemocytes of Penaeus japonicus by suppression subtractive hybridization (SSH) following microbial challenge

12 July 2018

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Identification of immune-related genes in hemocytes of black tiger shrimp (Penaeus monodon).

12 July 2018

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TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

12 July 2018

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Identifying differentially expressed genes using false discovery rate controlling procedures

12 July 2018

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The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

12 July 2018

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Early events in crustacean innate immunity

12 July 2018

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A beta-1,3-glucan binding protein from the black tiger shrimp, Penaeus monodon

12 July 2018

1 reference

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Immune gene discovery by expressed sequence tag analysis of hemocytes and hepatopancreas in the Pacific White Shrimp, Litopenaeus vannamei, and the Atlantic White Shrimp, L. setiferus

12 July 2018

1 reference

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The evolution and genetics of innate immunity

12 July 2018

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Gene ontology: tool for the unification of biology

12 July 2018

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ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences

12 July 2018

1 reference

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The COG database: a tool for genome-scale analysis of protein functions and evolution

12 July 2018

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KEGG: kyoto encyclopedia of genes and genomes

12 July 2018

1 reference

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The induction of apoptosis by bacterial pathogens

12 July 2018

1 reference

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Penaeidins, a new family of antimicrobial peptides isolated from the shrimp Penaeus vannamei (Decapoda).

12 July 2018

1 reference

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A conserved signaling pathway: the Drosophila toll-dorsal pathway

12 July 2018

1 reference

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Cellular defenses against damage from reactive oxygen species

12 July 2018

1 reference

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Apoptosis induced by bacterial pathogens

12 July 2018

1 reference

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Immunological role of thiol-dependent peroxiredoxin gene in Macrobrachium rosenbergii.

12 July 2018

1 reference

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Molecular cloning, characterization and gene expression of an antioxidant enzyme catalase (MrCat) from Macrobrachium rosenbergii.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

Bioinformatic characterization and gene expression pattern of apoptosis inhibitor from Macrobrachium rosenbergii challenged with infectious hypodermal and hematopoietic necrosis virus.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

Gene profiling and characterization of arginine kinase-1 (MrAK-1) from freshwater giant prawn (Macrobrachium rosenbergii).

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

Molecular cloning and expression analysis of signal transducer and activator of transcription (STAT) from the Chinese white shrimp Fenneropenaeus chinensis.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

Transcriptional regulation of extracellular copper zinc superoxide dismutase from white shrimp Litopenaeus vannamei following Vibrio alginolyticus and WSSV infection

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

Recombinant ferritin protein protects Penaeus monodon infected by pathogenic Vibrio harveyi

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

Glutathione S-transferase in the white shrimp Litopenaeus vannamei: Characterization and regulation under pH stress.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

A selenium-dependent glutathione peroxidase (Se-GPx) and two glutathione S-transferases (GSTs) from Chinese shrimp (Fenneropenaeus chinensis).

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

A Toll receptor from Chinese shrimp Fenneropenaeus chinensis is responsive to Vibrio anguillarum infection.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

A hepatopancreas-specific C-type lectin from the Chinese shrimp Fenneropenaeus chinensis exhibits antimicrobial activity.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

A transglutaminase from Chinese shrimp (Fenneropenaeus chinensis), full-length cDNA cloning, tissue localization and expression profile after challenge.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

Lysozyme gene expression by hemocytes of Pacific white shrimp, Litopenaeus vannamei, after injection with Vibrio.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

Cloning and expression analysis of an o-methyltransferase (OMT) gene from Chinese shrimp, Fenneropenaeus chinensis.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

Molecular cloning, characterization and expression analysis of a putative C-type lectin (Fclectin) gene in Chinese shrimp Fenneropenaeus chinensis.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

Recombinant expression and anti-microbial activity of anti-lipopolysaccharide factor (ALF) from the black tiger shrimp Penaeus monodon

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

The immune response of the white shrimp Litopenaeus vannamei and its susceptibility to Vibrio infection in relation with the moult cycle

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4411767

Global diversity of shrimps (Crustacea: Decapoda: Caridea) in freshwater

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS13099-015-0052-6

The prophenoloxidase activating system of the shrimp Penaeus paulensis and associated factors

21 January 2018

1 reference

12 December 2020

Essential function of transglutaminase and clotting protein in shrimp immunity

1 reference

12 December 2020

Regulation of phagocytosis against bacterium by Rab GTPase in shrimp Marsupenaeus japonicus

1 reference

12 December 2020

Antiviral properties of hemocyanin isolated from shrimp Penaeus monodon

1 reference

12 December 2020

The thermostable direct hemolysin of Vibrio parahaemolyticus is a pore-forming toxin

1 reference

12 December 2020

10.1186/S13099-015-0052-6

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25922623%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

6 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25922623%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25922623%20AND%20SRC:MED&resulttype=core&format=json