Does SINE evolution preclude Alu function? (Q34679535)

3 August 2017

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title

Does SINE evolution preclude Alu function? (English)

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3 August 2017

C W Schmid

1

1 reference

PubMed ID

9753719

3 August 2017

language of work or name

English

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publication date

1 October 1998

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3 August 2017

Nucleic Acids Research

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3 August 2017

26

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3 August 2017

20

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3 August 2017

4541-4550

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Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information

3 August 2017

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Emergence of master sequences in families of retroposons derived from 7sl RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the mesozoic era

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Paucity of novel short interspersed repetitive element (SINE) families in human DNA and isolation of a novel MER repeat

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Selfish genes, the phenotype paradigm and genome evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Selfish DNA: the ultimate parasite

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Gene conversion as a secondary mechanism of short interspersed element (SINE) evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

A fundamental division in the Alu family of repeated sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Sources and evolution of human Alu repeated sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Insertion of an Alu SINE in the human homologue of the Mlvi-2 locus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Alu sequences in the coding regions of mRNA: a source of protein variability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Dependence of intrachromosomal recombination in mammalian cells on uninterrupted homology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Transcriptional regulation and transpositional selection of active SINE sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Standardized nomenclature for Alu repeats.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Phylogenetic evidence for multiple Alu source genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Flanking sequences of an Alu source stimulate transcription in vitro by interacting with sequence-specific transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Germ line-specific expression of intracisternal A-particle retrotransposons in transgenic mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

RNA polymerase III promoter and terminator elements affect Alu RNA expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

The RNA polymerase III terminator used by a B1-Alu element can modulate 3' processing of the intermediate RNA product

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

The decline in human Alu retroposition was accompanied by an asymmetric decrease in SRP9/14 binding to dimeric Alu RNA and increased expression of small cytoplasmic Alu RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

A trinucleotide repeat-associated increase in the level of Alu RNA-binding protein occurred during the same period as the major Alu amplification that accompanied anthropoid evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Alu RNA transcripts in human embryonal carcinoma cells. Model of post-transcriptional selection of master sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

High frequency retrotransposition in cultured mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

The 3' ends of tRNA-derived short interspersed repetitive elements are derived from the 3' ends of long interspersed repetitive elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

LINEs and Alus--the polyA connection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Human Alu subfamilies and their methylation revealed by blot hybridization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Alu repeated DNAs are differentially methylated in primate germ cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Developmental differences in methylation of human Alu repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Specific Alu binding protein from human sperm chromatin prevents DNA methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

DNA methylation and genomic imprinting

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Histone- and protamine-DNA association: conservation of different patterns within the beta-globin domain in human sperm

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

How does DNA methylation repress transcription?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Proposed roles for DNA methylation in Alu transcriptional repression and mutational inactivation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Alu transcripts: cytoplasmic localisation and regulation by DNA methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Gene number, noise reduction and biological complexity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

A de novo Alu insertion results in neurofibromatosis type 1

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Cytosine methylation and the ecology of intragenomic parasites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Tightly regulated, developmentally specific expression of the first open reading frame from LINE-1 during mouse embryogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Adenovirus type 2 preferentially stimulates polymerase III transcription of Alu elements by relieving repression: a potential role for chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Activation of RNA polymerase III transcription of human Alu repetitive elements by adenovirus type 5: requirement for the E1b 58-kilodalton protein and the products of E4 open reading frames 3 and 6.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Activating-transcription-factor (ATF) regulates human 7S L RNA transcription by RNA polymerase IIIin vivoandin vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

p53 inhibits RNA polymerase III-directed transcription in a promoter-dependent manner

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Palindromic sequences preceding the terminator increase polymerase III template activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Cell stress and translational inhibitors transiently increase the abundance of mammalian SINE transcripts

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Induction of B2 RNA polymerase III transcription by heat shock: enrichment for heat shock induced sequences in rodent cells by hybridization subtraction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

The herpes simplex virus immediate-early protein ICP27 stimulates the transcription of cellular Alu repeated sequences by increasing the activity of transcription factor TFIIIC

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Expression of enhanced levels of small RNA polymerase III transcripts encoded by the B2 repeats in simian virus 40-transformed mouse cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Potential Alu function: regulation of the activity of double-stranded RNA-activated kinase PKR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

PKR: a new name and new roles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Deficient cytokine signaling in mouse embryo fibroblasts with a targeted deletion in the PKR gene: role of IRF-1 and NF-kappaB

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

The interferon-inducible protein kinase PKR modulates the transcriptional activation of immunoglobulin kappa gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Malignant transformation by a mutant of the IFN-inducible dsRNA-dependent protein kinase

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Tumor suppressor function of the interferon-induced double-stranded RNA-activated protein kinase

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

An essential role for the interferon-inducible, double-stranded RNA-activated protein kinase PKR in the tumor necrosis factor-induced apoptosis in U937 cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

A double-stranded RNA-activated protein kinase-dependent pathway mediating stress-induced apoptosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Two small RNAs encoded by Epstein-Barr virus can functionally substitute for the virus-associated RNAs in the lytic growth of adenovirus 5

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Translational control of GCN4: an in vivo barometer of initiation-factor activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

Genetic variation of recent Alu insertions in human populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

The evolutionary dynamics of repetitive DNA in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.20.4541

21 January 2018

Identifiers

DOI

10.1093/NAR/26.20.4541

1 reference

3 August 2017

1 reference

3 August 2017

1 reference

PubMed ID

9753719