Omics profiles used to evaluate the gene expression of Exiguobacterium antarcticum B7 during cold adaptation. (Q34586525)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

title

Omics profiles used to evaluate the gene expression of Exiguobacterium antarcticum B7 during cold adaptation (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

Exiguobacterium antarcticum

23 February 2020

main subject

RNA sequencing

0 references

0 references

author

Rommel Ramos

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Marta S Carepo

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Vivian H. Pellizari

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

Vasco Ariston de Carvalho Azevedo

23 February 2020

12

object named as

Vasco Azevedo

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

2

Rafael A Baraúna

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

15

Artur Silva

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

Adriana Ribeiro Carneiro Folador

23 February 2020

8

object named as

Adriana R Carneiro

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

7

Diego A das Graças

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

author name string

Hivana P M B Dall'Agnol

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Pablo H C G de Sá

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Felipe Nóbrega

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Catarina I P Nunes

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Daniel M Santos

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Maria P C Schneider

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Adriano M C Pimenta

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

language of work or name

English

0 references

publication date

18 November 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

volume

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

page(s)

986

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

Differential transcriptional profile of Corynebacterium pseudotuberculosis in response to abiotic stresses

23 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

RNA-Seq-based analysis of the physiologic cold shock-induced changes in Moraxella catarrhalis gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Bacterial growth at -15 °C; molecular insights from the permafrost bacterium Planococcus halocryophilus Or1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

2D gels still have a niche in proteomics.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Ion Torrent-based transcriptional assessment of a Corynebacterium pseudotuberculosis equi strain reveals denaturing high-performance liquid chromatography a promising rRNA depletion method.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Genome sequence of Exiguobacterium antarcticum B7, isolated from a biofilm in Ginger Lake, King George Island, Antarctica

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

SlrA/SinR/SlrR inhibits motility gene expression upstream of a hypersensitive and hysteretic switch at the level of σ(D) in Bacillus subtilis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Bacterial gene expression at low temperatures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Transcriptomes of Frankia sp. strain CcI3 in growth transitions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Application of RNA-seq to reveal the transcript profile in bacteria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

The RpoS-mediated general stress response in Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Analysis of quality raw data of second generation sequencers with Quality Assessment Software

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Diversity in transcripts and translational pattern of stress proteins in marine extremophiles

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

RNA remodeling and gene regulation by cold shock proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Differential involvement of the five RNA helicases in adaptation of Bacillus cereus ATCC 14579 to low growth temperatures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Molecular adaptations to psychrophily: the impact of 'omic' technologies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

The genome sequence of Psychrobacter arcticus 273-4, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Sequencing technologies - the next generation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

7 July 2018

Microbial thermosensors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Psychrobacter arcticus 273-4 uses resource efficiency and molecular motion adaptations for subzero temperature growth

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Thermus thermophilus as biological model.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approach

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Mapping and quantifying mammalian transcriptomes by RNA-Seq

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

The transcriptional landscape of the yeast genome defined by RNA sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Psychrophilic microorganisms: challenges for life

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Recent developments in bacterial cold-shock response

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Exiguobacterium undae sp. nov. and Exiguobacterium antarcticum sp. nov.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Psychrophiles and polar regions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Molecular basis of thermosensing: a two-component signal transduction thermometer in Bacillus subtilis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Role of CspC and CspE in regulation of expression of RpoS and UspA, the stress response proteins in Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Promoter recognition by Bacillus subtilis sigmaW: autoregulation and partial overlap with the sigmaX regulon

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Growth-phase-dependent expression of cspD, encoding a member of the CspA family in Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Cold shock stress-induced proteins in Bacillus subtilis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

7 July 2018

Psychrophilic bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Cold-loving microbes, plants, and animals—fundamental and applied aspects

7 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-986

A superfamily of proteins that contain the cold-shock domain.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-986

Novel interaction between the major bacterial heat shock chaperone (GroESL) and an RNA chaperone (CspC).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-986

Alkaline shock induces the Bacillus subtilis sigma(W) regulon.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-986

Organization and function of the YsiA regulon of Bacillus subtilis involved in fatty acid degradation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-986

Recent Antarctic Peninsula warming relative to Holocene climate and ice-shelf history

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-986

Phenotypic characterization of overexpression or deletion of the Escherichia coli crcA, cspE and crcB genes

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Carotenoids of an Antarctic psychrotolerant bacterium, Sphingobacterium antarcticus, and a mesophilic bacterium, Sphingobacterium multivorum

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247613

Proteomics of life at low temperatures: trigger factor is the primary chaperone in the Antarctic bacteriumPseudoalteromonas haloplanktisTAC125

27 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-986

ClpB and HtpG facilitate de novo protein folding in stressed Escherichia coli cells

21 January 2018

1 reference

12 December 2020

Adaptation of Bacillus subtilis to growth at low temperature: a combined transcriptomic and proteomic appraisal

1 reference

12 December 2020

Functional genomics of the initial phase of cold adaptation of Pseudomonas putida KT2440

1 reference

12 December 2020

Trigger factor associates with GroEL in vivo and promotes its binding to certain polypeptides

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-15-986

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25407400%20AND%20SRC:MED&resulttype=core&format=json