Chapter 9: Analyses using disease ontologies (Q34539681)

2 August 2017

Chapter 9: Analyses using disease ontologies (English)

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2 August 2017

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3

Mark A Musen

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Tyler Cole

object named as

Tyler Cole

series ordinal

2

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Nigam H. Shah

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1

object named as

Nigam H Shah

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2 August 2017

27 December 2012

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PLOS Computational Biology

2 August 2017

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2 August 2017

8

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12

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2 August 2017

e1002827

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Creative Commons Attribution 4.0 International

2 August 2017

start time

27 December 2012

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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A Comprehensive Analysis of Five Million UMLS Metathesaurus Terms Using Eighteen Million MEDLINE Citations

7 July 2018

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An ontology-neutral framework for enrichment analysis

7 July 2018

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7 July 2018

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In silico functional profiling of human disease-associated and polymorphic amino acid substitutions

7 July 2018

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Analysis of biological processes and diseases using text mining approaches

7 July 2018

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Generation of Gene Ontology benchmark datasets with various types of positive signal

7 July 2018

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Comparison of concept recognizers for building the Open Biomedical Annotator

7 July 2018

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Annotating the human genome with Disease Ontology

7 July 2018

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BioPortal: ontologies and integrated data resources at the click of a mouse

7 July 2018

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Ontology-driven indexing of public datasets for translational bioinformatics

7 July 2018

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7 July 2018

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Text mining for biology - the way forward: opinions from leading scientists

7 July 2018

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Use and misuse of the gene ontology annotations

7 July 2018

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The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

7 July 2018

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Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis

7 July 2018

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A review of modern multiple hypothesis testing, with particular attention to the false discovery proportion.

7 July 2018

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The human disease network

7 July 2018

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GOTax: investigating biological processes and biochemical activities along the taxonomic tree.

7 July 2018

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A scalable method for integration and functional analysis of multiple microarray datasets

7 July 2018

1 reference

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Additional gene ontology structure for improved biological reasoning

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278

Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

7 July 2018

1 reference

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

7 July 2018

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Ontological analysis of gene expression data: current tools, limitations, and open problems

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278

GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

7 July 2018

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CLENCH: a program for calculating Cluster ENriCHment using the Gene Ontology

7 July 2018

1 reference

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GoMiner: a resource for biological interpretation of genomic and proteomic data

7 July 2018

1 reference

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Global functional profiling of gene expression.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278

Microarray data normalization and transformation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278

Whole-genome expression analysis: challenges beyond clustering

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278

Significance analysis of microarrays applied to the ionizing radiation response

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278

Gene expression data analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278

SNOMED CT milestones: endorsements are added to already-impressive standards credentials

7 July 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23300417

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1002827

1 reference

2 August 2017

journals/ploscb/ShahCM12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 August 2017

1 reference

PubMed ID

23300417