RNA-Seq analysis uncovers transcriptomic variations between morphologically similar in vivo- and in vitro-derived bovine blastocysts (Q34209332)

31 July 2017

RNA-Seq analysis uncovers transcriptomic variations between morphologically similar in vivo- and in vitro-derived bovine blastocysts (English)

1 reference

31 July 2017

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1 reference

1 reference

Francisco Peñagaricano

2

object named as

Francisco Peñagaricano

1 reference

31 July 2017

Ashley M Driver

1

1 reference

31 July 2017

Wen Huang

3

1 reference

31 July 2017

Khawaja R Ahmad

4

1 reference

31 July 2017

Katie S Hackbart

5

1 reference

31 July 2017

Milo C Wiltbank

6

1 reference

31 July 2017

Hasan Khatib

7

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31 July 2017

language of work or name

English

0 references

publication date

28 March 2012

1 reference

31 July 2017

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31 July 2017

13

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31 July 2017

118

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Regulation of HMG-CoA reductase in mammals and yeast

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Improving RNA-Seq expression estimates by correcting for fragment bias

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Comparison of transcriptomic landscapes of bovine embryos using RNA-Seq

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Regulation of early trophoblast differentiation - lessons from the mouse.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Next generation sequencing in functional genomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Gene ontology analysis for RNA-seq: accounting for selection bias

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

BEDTools: a flexible suite of utilities for comparing genomic features

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

TopHat: discovering splice junctions with RNA-Seq

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Genome-wide expression profiling reveals distinct clusters of transcriptional regulation during bovine preimplantation development in vivo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Alternative isoform regulation in human tissue transcriptomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

A new presynchronization system (Double-Ovsynch) increases fertility at first postpartum timed AI in lactating dairy cows

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Gene expression profiling of single bovine embryos uncovers significant effects of in vitro maturation, fertilization and culture.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Mutations in the STAT5A gene are associated with embryonic survival and milk composition in cattle.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Histone deacetylase 3 down-regulates cholesterol synthesis through repression of lanosterol synthase gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

The use of the Dhcr7 knockout mouse to accurately determine the origin of fetal sterols

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Errors in development of fetuses and placentas from in vitro-produced bovine embryos

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Ex vivo early embryo development and effects on gene expression and imprinting.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Mouse and bovine models for human IVF.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Developmental, qualitative, and ultrastructural differences between ovine and bovine embryos produced in vivo or in vitro.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Risks of in-vitro production of cattle and swine embryos: aberrations in chromosome numbers, ribosomal RNA gene activation and perinatal physiology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Ultrastructure of bovine blastocysts following cryopreservation: effect of method of blastocyst production

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

Energy metabolism in preimplantation bovine embryos derived in vitro or in vivo.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

International Committee for Monitoring Assisted Reproductive Technology (ICMART) world report: assisted reproductive technology 2003.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-118

Ultrastructural morphometry of bovine blastocysts produced in vivo or in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-118

Effects of culture system and protein supplementation on mRNA expression in pre-implantation bovine embryos

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-118

Suppressed expression of genes involved in transcription and translation in in vitro compared with in vivo cultured bovine embryos.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-118

Zygote donor nitrogen metabolism and in vitro embryo culture perturbs in utero development and IGF2R expression in ovine fetal tissues.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-118

Effect of in vitro fertilization on gene expression and development of mouse preimplantation embryos.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-118

Differential expression of heat shock protein genes and their splice variants in bovine preimplantation embryos.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-118

Effect of dietary organic zinc, manganese, copper, and cobalt supplementation on milk production, follicular growth, embryo quality, and tissue mineral concentrations in dairy cows

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-118

Effect of bovine sperm separation by either swim-up or Percoll method on success of in vitro fertilization and early embryonic development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-118

Fine structure of bovine morulae and blastocysts in vivo and in vitro.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368723

In vitro culture of bovine egg fertilized either in vivo or in vitro

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22452724

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-13-118

1 reference

31 July 2017

1 reference

31 July 2017

1 reference