Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment (Q34118228)

31 July 2017

Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment (English)

1 reference

31 July 2017

0 references

7

David L Tabb

1 reference

31 July 2017

Surendra Dasari

1

1 reference

31 July 2017

Matthew C Chambers

2

1 reference

31 July 2017

Misti A Martinez

3

1 reference

31 July 2017

Kristin L Carpenter

4

1 reference

31 July 2017

Amy-Joan L Ham

5

1 reference

31 July 2017

Lorenzo J Vega-Montoto

6

1 reference

31 July 2017

language of work or name

1 reference

27 January 2012

1 reference

Journal of Proteome Research

31 July 2017

1 reference

31 July 2017

11

1 reference

31 July 2017

3

1 reference

31 July 2017

1686-1695

1 reference

Protein identification using customized protein sequence databases derived from RNA-Seq data

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Spectrum-to-spectrum searching using a proteome-wide spectral library

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Large improvements in MS/MS-based peptide identification rates using a hybrid analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Sequence tagging reveals unexpected modifications in toxicoproteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Tandem mass spectrometry spectral libraries and library searching

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

mzIdentML: an open community-built standard format for the results of proteomics spectrum identification algorithms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Mass spectrometric protein identification using the global proteome machine.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Using spectral libraries for peptide identification from tandem mass spectrometry (MS/MS) data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

TagRecon: high-throughput mutation identification through sequence tagging

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Analytical validation of protein-based multiplex assays: a workshop report by the NCI-FDA interagency oncology task force on molecular diagnostics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Artificial decoy spectral libraries for false discovery rate estimation in spectral library searching in proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

TopHat: discovering splice junctions with RNA-Seq

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Building consensus spectral libraries for peptide identification in proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

ProteoWizard: open source software for rapid proteomics tools development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Using BiblioSpec for creating and searching tandem MS peptide libraries

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Proteomic parsimony through bipartite graph analysis improves accuracy and transparency

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Development and validation of a spectral library searching method for peptide identification from MS/MS.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Using annotated peptide mass spectrum libraries for protein identification

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Method to compare collision-induced dissociation spectra of peptides: potential for library searching and subtractive analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

ScanRanker: Quality assessment of tandem mass spectra via sequence tagging

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

Automation of nanoscale microcapillary liquid chromatography-tandem mass spectrometry with a vented column

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292681

A NEW MEASURE OF RANK CORRELATION

28 October 2018

1 reference

19 June 2022

https://opencitations.net/index/coci/api/v1/citations/10.1093/BIOMET/30.1-2.81

Identifiers

DOI

10.1021/PR200874E

1 reference

31 July 2017

1 reference

31 July 2017

1 reference