From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.). (Q34032778)

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13 February 2020

title

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.). (English)

1 reference

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13 February 2020

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Martin Mascher

5

1 reference

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13 February 2020

Uwe Scholz

8

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Nils Stein

9

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13 February 2020

Klaus Mayer

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13 February 2020

Eva Bauer

11

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Stefan Taudien

1 reference

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13 February 2020

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Ruonan Zhou

1 reference

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1

Grit Haseneyer

1 reference

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13 February 2020

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Chris-Carolin Schön

1 reference

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13 February 2020

author name string

Michael Seidel

3

1 reference

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13 February 2020

publication date

28 September 2011

1 reference

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13 February 2020

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13 February 2020

volume

11

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page(s)

131

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21951788%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

13 February 2020

MIRA

object named as

Mira

MIRA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2229-11-131

0 references

cites work

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454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides

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De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley

5 July 2018

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The genome of the cucumber, Cucumis sativus L

5 July 2018

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TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics

5 July 2018

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Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

5 July 2018

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Development and characterization of a high density SNP genotyping assay for cattle

5 July 2018

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Finding the fifth base: genome-wide sequencing of cytosine methylation.

5 July 2018

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The Sorghum bicolor genome and the diversification of grasses

5 July 2018

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The 'inner circle' of the cereal genomes

5 July 2018

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A physical map of the 1-gigabase bread wheat chromosome 3B.

5 July 2018

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GabiPD: the GABI primary database--a plant integrative 'omics' database.

5 July 2018

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A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R.

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191334

Mapping short DNA sequencing reads and calling variants using mapping quality scores

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191334

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191334

EagleView: a genome assembly viewer for next-generation sequencing technologies

5 July 2018

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The Rice Annotation Project Database (RAP-DB): 2008 update

5 July 2018

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Gene expression profiling by massively parallel sequencing.

5 July 2018

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The Relationship of Heterozygosity to Homeostasis in Maize Hybrids.

5 July 2018

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MIPSPlantsDB--plant database resource for integrative and comparative plant genome research

5 July 2018

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Gene discovery and annotation using LCM-454 transcriptome sequencing.

5 July 2018

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Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

5 July 2018

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Genome sequencing in microfabricated high-density picolitre reactors

5 July 2018

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GMAP: a genomic mapping and alignment program for mRNA and EST sequences

5 July 2018

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Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs

5 July 2018

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Monitoring large-scale changes in transcript abundance in drought- and salt-stressed barley

5 July 2018

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A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191334

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191334

Primer3 on the WWW for general users and for biologist programmers

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191334

CAP3: A DNA sequence assembly program

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191334

Repeats in genomic DNA: mining and meaning.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191334

Reducing bias in cDNA sequence representation by molecular selection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191334

Genome size and the proportion of repeated nucleotide sequence DNA in plants

5 July 2018

1 reference

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Basic local alignment search tool

5 July 2018

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Construction of a uniform-abundance (normalized) cDNA library

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191334

Production of a new wheat line possessing the 1BL.1RS wheat-rye translocation derived from Korean rye cultivar Paldanghomil

5 July 2018

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https://api.crossref.org/works/10.1186%2F1471-2229-11-131

Whole-genome sequencing and variant discovery in C. elegans.

21 January 2018

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https://api.crossref.org/works/10.1186%2F1471-2229-11-131

A general approach to single-nucleotide polymorphism discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-11-131

Gene content and virtual gene order of barley chromosome 1H.

21 January 2018

1 reference

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A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191334

Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.).

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191334

Mapping of 99 new microsatellite-derived loci in rye (Secale cereale L.) including 39 expressed sequence tags

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21951788

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Comparative mapping of DNA sequences in rye (Secale cereale L.) in relation to the rice genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21951788

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Matplotlib: A 2D Graphics Environment

1 reference

28 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1109/MCSE.2007.55

Identifiers

DOI

10.1186/1471-2229-11-131

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21951788%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

13 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21951788%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1 reference