A close-up view on ITS2 evolution and speciation - a case study in the Ulvophyceae (Chlorophyta, Viridiplantae). (Q34024574)

30 July 2017

A close-up view on ITS2 evolution and speciation - a case study in the Ulvophyceae (Chlorophyta, Viridiplantae). (English)

1 reference

30 July 2017

0 references

1 reference

3

Michael Melkonian

1 reference

30 July 2017

Lenka Caisová

1

1 reference

PubMed ID

21933414

30 July 2017

Birger Marin

series ordinal

2

1 reference

30 July 2017

20 September 2011

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30 July 2017

BMC Evolutionary Biology

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30 July 2017

11

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30 July 2017

262

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https://scigraph.springernature.com/pub.10.1186/1471-2148-11-262

30 July 2017

0 references

cites work

Comparison of Eudorina/Pleodorina ITS sequences of isolates from nature with those from experimental hybrids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Internal transcribed spacer 2 (nu ITS2 rRNA) sequence-structure phylogenetics: towards an automated reconstruction of the green algal tree of life

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Cryptic species of Euryakaina n. g. (Digenea: Cryptogonimidae) from sympatric lutjanids in the Indo-West Pacific

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Ribosomal protein L35 is required for 27SB pre-rRNA processing in Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Arabidopsis thaliana XRN2 is required for primary cleavage in the pre-ribosomal RNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

RNAstructure: software for RNA secondary structure prediction and analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

The adenosine wedge: a new structural motif in ribosomal RNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

ITS2 secondary structure improves phylogeny estimation in a radiation of blue butterflies of the subgenus Agrodiaetus (Lepidoptera: Lycaenidae: Polyommatus ).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

rRNA maturation in yeast cells depleted of large ribosomal subunit proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

The final step in 5.8S rRNA processing is cytoplasmic in Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Evolutionary inferences based on ITS rDNA and actin sequences reveal extensive diversity of the common lichen alga Asterochloris (Trebouxiophyceae, Chlorophyta).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

ITS2 sequence-structure analysis in phylogenetics: a how-to manual for molecular systematics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Comparative study of the evolution of nuclear ribosomal spacers incorporating secondary structure analyzes within Dodonaeoideae, Hippocastanoideae and Xanthoceroideae (Sapindaceae).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Is there a molecular key to the level of "biological species" in eukaryotes? A DNA guide

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Secondary structure of the rRNA ITS2 region reveals key evolutionary patterns in acroporid corals

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

jModelTest: phylogenetic model averaging

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Secondary structure of ITS2 rRNA provides taxonomic characters for systematic studies--a case in Lycoperdaceae (Basidiomycota).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

5 July 2018

Distinguishing species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Pan-eukaryote ITS2 homologies revealed by RNA secondary structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Compensatory vs. pseudocompensatory evolution in molecular and developmental interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

The internal transcribed spacer 2 database--a web server for (not only) low level phylogenetic analyses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Structural and evolutionary classification of G/U wobble basepairs in the ribosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Life history affects the evolution of reproductive isolation among species of Coreopsis (Asteraceae).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

ITS-2 and 18S rRNA gene phylogeny of Aplysinidae (Verongida, Demospongiae).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Compensatory evolution in the human malaria parasite Plasmodium ovale

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Ribosome assembly in eukaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

MrBayes 3: Bayesian phylogenetic inference under mixed models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

ITS2 is a double-edged tool for eukaryote evolutionary comparisons

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Phylogeny and taxonomic revision of plastid-containing euglenophytes based on SSU rDNA sequence comparisons and synapomorphic signatures in the SSU rRNA secondary structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

The accuracy of ribosomal RNA comparative structure models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Exploring the phylogenetic utility of ITS sequences for animals: a test case for abalone (Haliotis).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Chloroplast DNA evidence for a North American origin of the Hawaiian silversword alliance (Asteraceae).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

The final step in the formation of 25S rRNA in Saccharomyces cerevisiae is performed by 5'-->3' exonucleases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

RNA secondary structure and compensatory evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

The relationship of thermodynamic stability at a G x U recognition site to tRNA aminoacylation specificity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Ribosomal internal transcribed spacer 2 (ITS2) exhibits a common core of secondary structure in vertebrates and yeast

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Intraspecies analysis: comparison of ITS sequence data and gene intron sequence data with breeding data for a worldwide collection of Gonium pectorale

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Multigene family of ribosomal DNA in Drosophila melanogaster reveals contrasting patterns of homogenization for IGS and ITS spacer regions. A possible mechanism to resolve this paradox

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

High apparent rate of simultaneous compensatory base-pair substitutions in ribosomal RNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

Evolution of compensatory substitutions through G.U intermediate state in Drosophila rRNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

On the phylogenetic validity of the flagellar apparatus in green algae and other chlorophyll A and B containing plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

The advantages of the ITS2 region of the nuclear rDNA cistron for analysis of phylogenetic relationships of insects: a Drosophila example.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

Paramecium aurelia revisited.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

Evolutionary diversification indicated by compensatory base changes in ITS2 secondary structures in a complex fungal species, Rhizoctonia solani

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

Evolution of rDNA ITS1 and ITS2 sequences and RNA secondary structures within members of the fungal genera Grosmannia and Leptographium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

BIOGEOGRAPHY AND SPECIATION IN THE PANDORINA/VOLVULINA (CHLOROPHYTA) SUPERCLADE

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

Reproductive isolation among sympatric cryptic species in marine diatoms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

ITS secondary structure derived from comparative analysis: implications for sequence alignment and phylogeny of the Asteraceae

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

Phylogenetic hypotheses of gorgoniid octocorals according to ITS2 and their predicted RNA secondary structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

Generalized structure and evolution of ITS1 and ITS2 rDNA in black flies (Diptera: Simuliidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

Comparative analysis of sequences and secondary structures of the rRNA internal transcribed spacer 2 (ITS2) in pollen beetles of the subfamily Meligethinae (Coleoptera, Nitidulidae): potential use of slippage-derived sequences in molecular systemati

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

Compensatory base changes illuminate morphologically difficult taxonomy

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

Structural partitioning, paired-sites models and evolution of the ITS transcript in Syzygium and Myrtaceae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

Mechanisms and convergence of compensatory evolution in mammalian mitochondrial tRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

Molecular phylogenetic evidence for a reversible morphogenetic switch controlling the gross morphology of two common genera of green seaweeds, Ulva and Enteromorpha.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

Linnaeus was right all along:Ulva and Enteromorpha are not distinct genera

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

Molecular evidence for natural intergeneric hybridization between Liquidambar and Altingia

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

Structure and function of the conserved 690 hairpin in Escherichia coli 16 S ribosomal RNA. III. Functional analysis of the 690 loop

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

G.U base pairing motifs in ribosomal RNA.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3225284

INVESTIGATIONS INTO SOUTHERN AUSTRALIAN ULVA (ULVOPHYCEAE, CHLOROPHYTA) TAXONOMY AND MOLECULAR PHYLOGENY INDICATE BOTH COSMOPOLITANISM AND ENDEMIC CRYPTIC SPECIES1

29 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-262

Comparative ultrastructure of eyespot membranes in gametes and zoospores of the green algaUlva lactuca(ulvales)

21 January 2018

1 reference

12 December 2020

A plastid in the making: evidence for a second primary endosymbiosis

1 reference

12 December 2020

Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis

1 reference

12 December 2020

The significance of a coincidence between evolutionary landmarks found in mating affinity and a DNA sequence

1 reference

12 December 2020

Novel morphology in Enteromorpha (Ulvophyceae) forming green tides

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2148-11-262

1 reference

PubMed ID

21933414

Dimensions Publication ID

30 July 2017

1007638638

0 references

Fatcat ID

release_ks5c5kq7dzgr3lyaeby7d3bsdm

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ks5c5kq7dzgr3lyaeby7d3bsdm

24 November 2022

mapped directly with Wikidata item

PMCID

3225284

1 reference

30 July 2017

1 reference

PubMed ID

21933414