Reproducibility and quantitation of amplicon sequencing-based detection (Q33827930)

29 July 2017

Reproducibility and quantitation of amplicon sequencing-based detection (English)

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29 July 2017

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Jizhong Zhou

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29 July 2017

Liyou Wu

2

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29 July 2017

Ye Deng

3

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29 July 2017

Xiaoyang Zhi

4

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29 July 2017

Yi-Huei Jiang

5

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29 July 2017

Qichao Tu

6

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29 July 2017

Jianping Xie

7

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29 July 2017

Joy D Van Nostrand

8

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29 July 2017

Zhili He

9

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29 July 2017

Yunfeng Yang

10

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29 July 2017

language of work or name

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24 February 2011

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29 July 2017

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29 July 2017

5

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29 July 2017

8

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29 July 2017

1303-1313

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https://scigraph.springernature.com/pub.10.1038/ismej.2011.11

29 July 2017

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cites work

Predictive microbial ecology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

High-density 16S microarray and clone library-based microbial community composition of the Phoenix spacecraft assembly clean room

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

The analysis of oral microbial communities of wild-type and toll-like receptor 2-deficient mice using a 454 GS FLX Titanium pyrosequencer.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty Bay, maritime Antarctica

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Bacterial diversity in a glacier foreland of the high Arctic

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

The carnivorous pale pitcher plant harbors diverse, distinct, and time-dependent bacterial communities

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Accurate determination of microbial diversity from 454 pyrosequencing data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

The rational exploration of microbial diversity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Spatial scaling of functional gene diversity across various microbial taxa.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Pyrosequencing enumerates and contrasts soil microbial diversity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Microbial population structures in the deep marine biosphere

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Accuracy and quality of massively parallel DNA pyrosequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Query-dependent banding (QDB) for faster RNA similarity searches

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Archaea predominate among ammonia-oxidizing prokaryotes in soils

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Microbial diversity in the deep sea and the underexplored "rare biosphere"

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Using pyrosequencing to shed light on deep mine microbial ecology

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Genome sequencing in microfabricated high-density picolitre reactors

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

4 July 2018

The metagenomics of soil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Microbial diversity and function in soil: from genes to ecosystems

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Acclimatization of soil respiration to warming in a tall grass prairie

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

PicoGreen quantitation of DNA: effective evaluation of samples pre- or post-PCR.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

DNA recovery from soils of diverse composition.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Estimating the population size for capture-recapture data with unequal catchability

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146266

Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use

4 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.11

Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.11

Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.11

Systematic artifacts in metagenomes from complex microbial communities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.11

Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.11

Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.11

Rapid whole-genome mutational profiling using next-generation sequencing technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.11

Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.11

Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.11

Novel techniques for analysing microbial diversity in natural and perturbed environments

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21346791

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Non-parametric multivariate analyses of changes in community structure

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.11

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/ISMEJ.2011.11

1 reference

Dimensions Publication ID

29 July 2017

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29 July 2017

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