An integrative method to normalize RNA-Seq data (Q31165581)

25 September 2017

An integrative method to normalize RNA-Seq data (English)

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25 September 2017

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5

Klopp Christophe

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ORCID Public Data File 2021

25 September 2017

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author name string

Cyril Filloux

1

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25 September 2017

Meersseman Cédric

2

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25 September 2017

Philippe Romain

3

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25 September 2017

Forestier Lionel

4

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25 September 2017

Rocha Dominique

6

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25 September 2017

Maftah Abderrahman

7

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25 September 2017

Petit Daniel

8

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25 September 2017

14 June 2014

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25 September 2017

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25 September 2017

15

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25 September 2017

188

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https://scigraph.springernature.com/pub.10.1186/1471-2105-15-188

25 September 2017

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cites work

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STAR: ultrafast universal RNA-seq aligner

21 June 2018

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A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

21 June 2018

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

21 June 2018

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Summarizing and correcting the GC content bias in high-throughput sequencing

21 June 2018

1 reference

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Removing technical variability in RNA-seq data using conditional quantile normalization

21 June 2018

1 reference

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A new approach to bias correction in RNA-Seq

21 June 2018

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GC-content normalization for RNA-Seq data

21 June 2018

1 reference

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Bias detection and correction in RNA-Sequencing data

21 June 2018

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Improving RNA-Seq expression estimates by correcting for fragment bias

21 June 2018

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Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

21 June 2018

1 reference

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Length bias correction for RNA-seq data in gene set analyses

21 June 2018

1 reference

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Accurate quantification of transcriptome from RNA-Seq data by effective length normalization

21 June 2018

1 reference

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A two-parameter generalized Poisson model to improve the analysis of RNA-seq data

21 June 2018

1 reference

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Modeling non-uniformity in short-read rates in RNA-Seq data

21 June 2018

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 June 2018

1 reference

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Biases in Illumina transcriptome sequencing caused by random hexamer priming

21 June 2018

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Understanding mechanisms underlying human gene expression variation with RNA sequencing

21 June 2018

1 reference

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A scaling normalization method for differential expression analysis of RNA-seq data

21 June 2018

1 reference

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Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4067528

FRT-seq: amplification-free, strand-specific transcriptome sequencing

21 June 2018

1 reference

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Transcript length bias in RNA-seq data confounds systems biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4067528

Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

21 June 2018

1 reference

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Glycosylation-related genes are variably expressed depending on the differentiation state of a bioaminergic neuronal cell line: implication for the cellular prion protein

21 June 2018

1 reference

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A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

21 June 2018

1 reference

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

21 June 2018

1 reference

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Stem cell transcriptome profiling via massive-scale mRNA sequencing

21 June 2018

1 reference

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4067528

The transcriptional landscape of the yeast genome defined by RNA sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4067528

Small-sample estimation of negative binomial dispersion, with applications to SAGE data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4067528

Systematic comparison of RNA-Seq normalization methods using measurement error models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4067528

31 October 2018

Identifiers

DOI

10.1186/1471-2105-15-188

1 reference

journals/bmcbi/FillouxMPFKRMP14

25 September 2017

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DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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1 reference

25 September 2017

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