shortran: a pipeline for small RNA-seq data analysis (Q30558766)

13 August 2017

shortran: a pipeline for small RNA-seq data analysis (English)

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13 August 2017

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Stig Uggerhøj Andersen

object named as

Stig U Andersen

5

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Jens Stougaard

object named as

Jens Stougaard

4

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author name string

Vikas Gupta

1

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13 August 2017

Katharina Markmann

2

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13 August 2017

Christian N S Pedersen

3

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13 August 2017

language of work or name

English

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publication date

22 August 2012

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13 August 2017

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13 August 2017

28

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13 August 2017

20

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13 August 2017

2698-2700

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Creative Commons Attribution-NonCommercial 3.0 Unported

13 August 2017

start time

2 October 2016

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April 2023 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC3467745

based on heuristic

inferred from PubMed Central ID database lookup

cites work

High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis

1 reference

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miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467745

wapRNA: a web-based application for the processing of RNA sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467745

miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467745

ECHO: a reference-free short-read error correction algorithm

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467745

Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467745

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467745

Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3467745

DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments

14 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS496

A toolkit for analysing large-scale plant small RNA datasets.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS496

10.1093/BIOINFORMATICS/BTS496

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/GuptaMPSA12

13 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

13 August 2017

1 reference