Open-access synthetic spike-in mRNA-seq data for cancer gene fusions (Q30487334)

11 November 2017

Open-access synthetic spike-in mRNA-seq data for cancer gene fusions (English)

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11 November 2017

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7

Valerie Montel

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author name string

Waibhav D Tembe

1

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11 November 2017

Stephanie J K Pond

2

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11 November 2017

Christophe Legendre

3

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11 November 2017

Han-Yu Chuang

4

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11 November 2017

Winnie S Liang

5

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11 November 2017

Nancy E Kim

6

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11 November 2017

Shukmei Wong

8

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11 November 2017

Timothy K McDaniel

9

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11 November 2017

David W Craig

10

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11 November 2017

John D Carpten

11

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11 November 2017

language of work or name

English

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publication date

30 September 2014

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11 November 2017

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11 November 2017

15

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11 November 2017

824

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https://scigraph.springernature.com/pub.10.1186/1471-2164-15-824

11 November 2017

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cites work

State-of-the-art fusion-finder algorithms sensitivity and specificity

1 reference

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Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectives

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4190330

Fast gapped-read alignment with Bowtie 2

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4190330

ChimeraScan: a tool for identifying chimeric transcription in sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4190330

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4190330

A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4190330

ALK inhibition for non-small cell lung cancer: from discovery to therapy in record time

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4190330

Rapid and dramatic radiographic and clinical response to an ALK inhibitor (crizotinib, PF02341066) in an ALK translocation-positive patient with non-small cell lung cancer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4190330

Anaplastic lymphoma kinase inhibition in non-small-cell lung cancer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4190330

Fast and SNP-tolerant detection of complex variants and splicing in short reads

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4190330

Fast and accurate long-read alignment with Burrows-Wheeler transform

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4190330

A comprehensive catalogue of somatic mutations from a human cancer genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4190330

Rational approaches to the design of therapeutics targeting molecular markers: the case of chronic myelogenous leukemia

20 June 2018

1 reference

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Chronic Myeloid Leukemia — Advances in Biology and New Approaches to Treatment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4190330

Use of all-trans retinoic acid in the treatment of acute promyelocytic leukemia

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4190330

All-trans retinoic acid as a differentiation therapy for acute promyelocytic leukemia. I. Clinical results

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4190330

Chromosomal translocation t(15;17) in human acute promyelocytic leukemia fuses RARα with a novel putative transcription factor, PML

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4190330

Genetics: Gene fusion power

20 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25266161

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-15-824

1 reference

Dimensions Publication ID

11 November 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-15-824

1 reference

11 November 2017

1 reference