Condition-specific target prediction from motifs and expression. (Q30359009)

20 June 2017

Condition-specific target prediction from motifs and expression. (English)

1 reference

20 June 2017

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2

Martin Vingron

1 reference

20 June 2017

Guofeng Meng

1

1 reference

PubMed ID

24532727

20 June 2017

language of work or name

English

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publication date

14 February 2014

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20 June 2017

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20 June 2017

30

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20 June 2017

12

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20 June 2017

1643-1650

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Differentially expressed androgen-regulated genes in androgen-sensitive tissues reveal potential biomarkers of early prostate cancer

20 June 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Diversity and complexity in DNA recognition by transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Distinct p53 genomic binding patterns in normal and cancer-derived human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Novel c-MYC target genes mediate differential effects on cell proliferation and migration

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

An integrated encyclopedia of DNA elements in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Human housekeeping genes are compact

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Architecture of the human regulatory network derived from ENCODE data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

A Pin1/mutant p53 axis promotes aggressiveness in breast cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Hormone depletion-insensitivity of prostate cancer cells is supported by the AR without binding to classical response elements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

FIMO: scanning for occurrences of a given motif

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Ablation of key oncogenic pathways by RITA-reactivated p53 is required for efficient apoptosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

oPOSSUM: integrated tools for analysis of regulatory motif over-representation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Genomic antagonism between retinoic acid and estrogen signaling in breast cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Linking ligand-induced alterations in androgen receptor structure to differential gene expression: a first step in the rational design of selective androgen receptor modulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

MATCH: A tool for searching transcription factor binding sites in DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

TFBS: Computational framework for transcription factor binding site analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Transcription regulation and animal diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Whole-genome cartography of estrogen receptor alpha binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Asap: a framework for over-representation statistics for transcription factor binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Identification of functional networks of estrogen- and c-Myc-responsive genes and their relationship to response to tamoxifen therapy in breast cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Enhancer function: new insights into the regulation of tissue-specific gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Identification of novel p53 pathway activating small-molecule compounds reveals unexpected similarities with known therapeutic agents

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Close association of RNA polymerase II and many transcription factors with Pol III genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Predicting transcription factor affinities to DNA from a biophysical model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

CpG-depleted promoters harbor tissue-specific transcription factor binding signals--implications for motif overrepresentation analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Estrogen receptor silencing induces epithelial to mesenchymal transition in human breast cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Role of p53 serine 46 in p53 target gene regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

The general transcription machinery and general cofactors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Significance analysis of microarrays applied to the ionizing radiation response

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Proteomic interrogation of androgen action in prostate cancer cells reveals roles of aminoacyl tRNA synthetases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Research Resource: The androgen receptor modulates expression of genes with critical roles in muscle development and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

A comprehensive ChIP-chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU066

10.1093/BIOINFORMATICS/BTU066

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/MengV14

20 June 2017

1 reference

DBLP Dataset 2021-01-02

release_43q2pbl3pfcvradbcokuit7a7q

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/43q2pbl3pfcvradbcokuit7a7q

mapped directly with Wikidata item

24 November 2022

based on heuristic

PubMed ID

24532727

1 reference

PubMed ID

24532727