Zinc finger transcription factors displaced SREBP proteins as the major Sterol regulators during Saccharomycotina evolution (Q28538769)

Geraldine Butler

10

0 references

Theodore C White

Theodore C White

8

0 references

Kenneth H. Wolfe

Kenneth H Wolfe

9

0 references

Jean-Marc Nicaud

Jean-Marc Nicaud

6

0 references

Cécile Neuvéglise

5

Cécile Neuvéglise

0 references

author name string

Can Wang

2

0 references

Linda M Holland

3

0 references

François Brunel

4

0 references

Martin Zavrel

Creative Commons Attribution 4.0 International

7

0 references

language of work or name

English

0 references

publication date

January 2014

0 references

published in

PLOS Genetics

0 references

volume

10

0 references

issue

1

0 references

page(s)

e1004076

0 references

copyright license

start time

16 January 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

DESeq2

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Sterol-regulated transport of SREBPs from endoplasmic reticulum to Golgi: oxysterols block transport by binding to Insig

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Transcriptional profiling identifies two members of the ATP-binding cassette transporter superfamily required for sterol uptake in yeast

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The E-box DNA binding protein Sgc1p suppresses the gcr2 mutation, which is involved in transcriptional activation of glycolytic genes in Saccharomyces cerevisiae

19 March 2017

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Regulators of pseudohyphal differentiation in Saccharomyces cerevisiae identified through multicopy suppressor analysis in ammonium permease mutant strains

19 March 2017

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Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 A resolution

19 March 2017

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The CUG codon is decoded in vivo as serine and not leucine in Candida albicans

19 March 2017

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SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building

19 March 2017

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Multiple sequence alignment using ClustalW and ClustalX

7 April 2017

1 reference

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SREBPs: activators of the complete program of cholesterol and fatty acid synthesis in the liver

7 April 2017

1 reference

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Molecular evidence for an ancient duplication of the entire yeast genome

7 April 2017

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7 April 2017

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7 April 2017

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Evolutionary principles of modular gene regulation in yeasts

29 September 2017

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29 September 2017

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Comparison of sterol import under aerobic and anaerobic conditions in three fungal species, Candida albicans, Candida glabrata, and Saccharomyces cerevisiae.

29 September 2017

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Dsc orthologs are required for hypoxia adaptation, triazole drug responses, and fungal virulence in Aspergillus fumigatus

29 September 2017

1 reference

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29 September 2017

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Protein modularity, cooperative binding, and hybrid regulatory states underlie transcriptional network diversification

29 September 2017

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Regulation of lipid metabolism: a tale of two yeasts

29 September 2017

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Transcriptomic and proteomic analyses of the Aspergillus fumigatus hypoxia response using an oxygen-controlled fermenter

29 September 2017

1 reference

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Using RNA-seq to determine the transcriptional landscape and the hypoxic response of the pathogenic yeast Candida parapsilosis

29 September 2017

1 reference

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Yeast sterol regulatory element-binding protein (SREBP) cleavage requires Cdc48 and Dsc5, a ubiquitin regulatory X domain-containing subunit of the Golgi Dsc E3 ligase

29 September 2017

1 reference

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Regulation of the Sre1 hypoxic transcription factor by oxygen-dependent control of DNA binding

29 September 2017

1 reference

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Yeast SREBP cleavage activation requires the Golgi Dsc E3 ligase complex.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Sterol regulatory element binding proteins in fungi: hypoxic transcription factors linked to pathogenesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Transcriptional regulation of carbohydrate metabolism in the human pathogen Candida albicans

29 September 2017

1 reference

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Conservation of the sterol regulatory element-binding protein pathway and its pathobiological importance in Cryptococcus neoformans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Oxygen-dependent binding of Nro1 to the prolyl hydroxylase Ofd1 regulates SREBP degradation in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Responses to hypoxia in fungal pathogens

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Oxygen-regulated degradation of fission yeast SREBP by Ofd1, a prolyl hydroxylase family member

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Genomewide location analysis of Candida albicans Upc2p, a regulator of sterol metabolism and azole drug resistance

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Transcription factor substitution during the evolution of fungal ribosome regulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Proteomic analysis reveals metabolic changes during yeast to hypha transition in Yarrowia lipolytica.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Regulation of sterol synthesis in eukaryotes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Transcriptional rewiring of fungal galactose-metabolism circuitry

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Metabolic-state-dependent remodeling of the transcriptome in response to anoxia and subsequent reoxygenation in Saccharomyces cerevisiae.

29 September 2017

1 reference

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Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Ashbya gossypii: a model for fungal developmental biology

29 September 2017

1 reference

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Strains and strategies for large-scale gene deletion studies of the diploid human fungal pathogen Candida albicans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Role of Candida albicans transcription factor Upc2p in drug resistance and sterol metabolism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

The distinct morphogenic states of Candida albicans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Cholesterol addition to ER membranes alters conformation of SCAP, the SREBP escort protein that regulates cholesterol metabolism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

The SREBP pathway in Drosophila: regulation by palmitate, not sterols

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Genomic analyses of anaerobically induced genes in Saccharomyces cerevisiae: functional roles of Rox1 and other factors in mediating the anoxic response.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Transcriptional control of dimorphism in Candida albicans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

DNA array studies demonstrate convergent regulation of virulence factors by Cph1, Cph2, and Efg1 in Candida albicans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

The basic helix-loop-helix transcription factor Cph2 regulates hyphal development in Candida albicans partly via TEC1

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Tagging morphogenetic genes by insertional mutagenesis in the yeast Yarrowia lipolytica

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

HOY1, a homeo gene required for hyphal formation in Yarrowia lipolytica

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

The GCR1 requirement for yeast glycolytic gene expression is suppressed by dominant mutations in the SGC1 gene, which encodes a novel basic-helix-loop-helix protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Dual DNA binding specificity of ADD1/SREBP1 controlled by a single amino acid in the basic helix-loop-helix domain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Isolation and characterization of the Saccharomyces cerevisiae SUT1 gene involved in sterol uptake

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Following gene duplication, paralog interference constrains transcriptional circuit evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

The APSES transcription factor Efg1 is a global regulator that controls morphogenesis and biofilm formation in Candida parapsilosis.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

A functional selection model explains evolutionary robustness despite plasticity in regulatory networks

3 June 2018

1 reference

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Regulation of the hypoxic response in Candida albicans

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Insig regulates HMG-CoA reductase by controlling enzyme phosphorylation in fission yeast

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Candida albicans UPC2 is transcriptionally induced in response to antifungal drugs and anaerobicity through Upc2p-dependent and -independent mechanisms.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Candida albicans zinc cluster protein Upc2p confers resistance to antifungal drugs and is an activator of ergosterol biosynthetic genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Physiology and genetics of the dimorphic fungus Yarrowia lipolytica

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Dramatic changes in transcription factor binding over evolutionary time

3 June 2018

1 reference

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Evolution of alternative transcriptional circuits with identical logic

21 January 2018

1 reference

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Contribution of the glycolytic flux and hypoxia adaptation to efficient biofilm formation by Candida albicans

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004076

SREBP pathway responds to sterols and functions as an oxygen sensor in fission yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004076

Multiple-copy integration in the yeast Yarrowia lipolytica.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004076

Identification of dimorphism-involved genes of Yarrowia lipolytica by means of microarray analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004076

Factors affecting the morphogenetic switch in Yarrowia lipolytica

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004076

Different effectors of dimorphism in Yarrowia lipolytica

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004076

The Candida glabrata putative sterol transporter gene CgAUS1 protects cells against azoles in the presence of serum

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004076

Transcriptional response of the obligatory aerobe Trichoderma reesei to hypoxia and transient anoxia: implications for energy production and survival in the absence of oxygen.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004076

Regulatory role of the PKA pathway in dimorphism and mating in Yarrowia lipolytica.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004076

STE11 disruption reveals the central role of a MAPK pathway in dimorphism and mating in Yarrowia lipolytica

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004076

The TEA/ATTS transcription factor YlTec1p represses the yeast-to-hypha transition in the dimorphic yeast Yarrowia lipolytica.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004076

Engineering polyhydroxyalkanoate content and monomer composition in the oleaginous yeast Yarrowia lipolytica by modifying the ß-oxidation multifunctional protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004076

Protein expression and secretion in the yeast Yarrowia lipolytica

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3894159

Transcription factors CgUPC2A and CgUPC2B regulate ergosterol biosynthetic genes in Candida glabrata

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24453983

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The regulatory subunit of protein kinase A promotes hyphal growth and plays an essential role in Yarrowia lipolytica

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24453983

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1004076

1 reference

2874989

2874989

1 reference

1 reference

1 reference