Nascent chromatin capture proteomics determines chromatin dynamics during DNA replication and identifies unknown fork components (Q24338173)

SMC5-SMC6 complex localization factor 2

GOA release 2020-03-11

1 reference

ATPase family AAA domain containing 2B

GOA release 2020-03-11

1 reference

GOA release 2020-03-11

author

Juri Rappsilber

9

0 references

Flavia de Lima Alves

Jimi-Carlo Bukowski-Wills

6

0 references

2

0 references

Anja Groth

10

object named as

Anja Groth

0 references

Kyosuke Nakamura

object named as

Kyosuke Nakamura

5

0 references

Georg Kustatscher

object named as

Georg Kustatscher

4

0 references

author name string

Constance Alabert

1

0 references

Sung-Bau Lee

3

0 references

Patrice Menard

7

0 references

Jakob Mejlvang

Identification of FAM111A as an SV40 host range restriction and adenovirus helper factor

8

0 references

language of work or name

English

0 references

publication date

March 2014

0 references

published in

Nature Cell Biology

0 references

volume

16

0 references

page(s)

281-93

0 references

issue

3

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

A decade of exploring the cancer epigenome - biological and translational implications

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Identification of the MMS22L-TONSL complex that promotes homologous recombination

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Purification of proteins associated with specific genomic Loci

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Characterization of human exonuclease 1 in complex with mismatch repair proteins, subcellular localization and association with PCNA

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Mre11 complex and DNA replication: linkage to E2F and sites of DNA synthesis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

PCNA directs type 2 RNase H activity on DNA replication and repair substrates

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Role of the polycomb protein EED in the propagation of repressive histone marks

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Subtle alterations in PCNA-partner interactions severely impair DNA replication and repair

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Mechanisms and functions of DNA mismatch repair

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Regulation of replication fork progression through histone supply and demand

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

PCNA, the maestro of the replication fork

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

The human and mouse replication-dependent histone genes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

A small peptide inhibitor of DNA replication defines the site of interaction between the cyclin-dependent kinase inhibitor p21WAF1 and proliferating cell nuclear antigen

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Histone methyltransferases in cancer

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

In-gel digestion for mass spectrometric characterization of proteins and proteomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Assembling chromatin: the long and winding road

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

TrxG and PcG proteins but not methylated histones remain associated with DNA through replication

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Cell-cycle-dependent structural transitions in the human CENP-A nucleosome in vivo

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Common variants at 11q12, 10q26 and 3p11.2 are associated with prostate cancer susceptibility in Japanese

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Chromatin replication and epigenome maintenance

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

DNA mediated chromatin pull-down for the study of chromatin replication.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

SMARCAL1 catalyzes fork regression and Holliday junction migration to maintain genome stability during DNA replication

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

A model for mitotic inheritance of histone lysine methylation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Analysis of protein dynamics at active, stalled, and collapsed replication forks.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Cell cycle dynamics of histone variants at the centromere, a model for chromosomal landmarks.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Eukaryotic DNA replication origins: many choices for appropriate answers

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Chromatin structure and the inheritance of epigenetic information

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Double-strand DNA breaks recruit the centromeric histone CENP-A.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

A model for transmission of the H3K27me3 epigenetic mark

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Propagation of centromeric chromatin requires exit from mitosis.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Local action of the chromatin assembly factor CAF-1 at sites of nucleotide excision repair in vivo

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Duplication and maintenance of heterochromatin domains

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Mcm2, but not RPA, is a component of the mammalian early G1-phase prereplication complex

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Conservation of deposition-related acetylation sites in newly synthesized histones H3 and H4.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Replication of Eukaryotic Chromosomes: A Close-up of the Replication Fork

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Interrelationships of protein and DNA syntheses during replication of mammalian cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Assembly of newly replicated chromatin

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Monitoring the spatiotemporal dynamics of proteins at replication forks and in assembled chromatin using isolation of proteins on nascent DNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Differential effects by the p21 CDK inhibitor on PCNA-dependent DNA replication and repair.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Visualising chromosomal replication sites and replicons in mammalian cells.

27 September 2017

1 reference

Nuclear organization studied with the help of a hypotonic shift: its use permits hydrophilic molecules to enter into living cells.

21 January 2018

1 reference

Establishment of histone modifications after chromatin assembly

21 January 2018

1 reference

Polycomb proteins remain bound to chromatin and DNA during DNA replication in vitro

21 January 2018

1 reference

Histone H2A.Z inheritance during the cell cycle and its impact on promoter organization and dynamics.

21 January 2018

1 reference

Contributions of the two accessory subunits, RNASEH2B and RNASEH2C, to the activity and properties of the human RNase H2 complex

21 January 2018

1 reference

Identification of a novel, widespread, and functionally important PCNA-binding motif

21 January 2018

1 reference

Replication Stress Interferes with Histone Recycling and Predeposition Marking of New Histones

21 January 2018

1 reference

A fraction of MCM 2 proteins remain associated with replication foci during a major part of S phase.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4283098

Histone deacetylation is required for the maturation of newly replicated chromatin

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24561620

12 December 2020

inferred from PubMed ID database lookup

Histone acetylation reduces H1-mediated nucleosome interactions during chromatin assembly

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24561620

12 December 2020

inferred from PubMed ID database lookup

Chromatin compaction by a polycomb group protein complex

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24561620

12 December 2020

inferred from PubMed ID database lookup

Proteomics of a fuzzy organelle: interphase chromatin

1 reference

7 January 2021

inferred from DOI database lookup

Understanding transgenerational epigenetic inheritance via the gametes in mammals

1 reference

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NCB2918

1 reference

Dimensions Publication ID

1891446

1027991326

0 references

1891446

1 reference

1 reference

1 reference