Does positive selection drive transcription factor binding site turnover? A test with Drosophila cis-regulatory modules (Q21563386)

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Does Positive Selection Drive Transcription Factor Binding Site Turnover? A Test with Drosophila Cis-Regulatory Modules

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English	Does positive selection drive transcription factor binding site turnover? A test with Drosophila cis-regulatory modules	scientific article	Does Positive Selection Drive Transcription Factor Binding Site Turnover? A Test with Drosophila Cis-Regulatory Modules

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scholarly article

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Does positive selection drive transcription factor binding site turnover? A test with Drosophila cis-regulatory modules (English)

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Martin Kreitman

4

object named as

Martin Kreitman

author given names

Martin

author last names

Kreitman

1 reference

24 September 2022

object named as

Bin Z He

1

author given names

Bin Z

author last names

He

1 reference

24 September 2022

Sebastian Maerkl

object named as

Sebastian J Maerkl

3

author given names

Sebastian J

author last names

Maerkl

1 reference

24 September 2022

author name string

Alisha K Holloway

2

author given names

Alisha K

author last names

Holloway

1 reference

24 September 2022

language of work or name

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publication date

April 2011

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7

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4

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e1002053

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Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

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19 March 2017

Waiting for two mutations: with applications to regulatory sequence evolution and the limits of Darwinian evolution

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19 March 2017

MEME: discovering and analyzing DNA and protein sequence motifs

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19 March 2017

Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison

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19 March 2017

Functional evolution of a cis-regulatory module

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19 March 2017

PAML 4: phylogenetic analysis by maximum likelihood

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19 March 2017

Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species

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19 March 2017

Adaptive protein evolution at the Adh locus in Drosophila

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19 March 2017

Diversity and complexity in DNA recognition by transcription factors

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7 April 2017

Coevolution within a transcriptional network by compensatory trans and cis mutations.

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12 September 2017

Statistical tests for natural selection on regulatory regions based on the strength of transcription factor binding sites

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12 September 2017

Evolutionary processes acting on candidate cis-regulatory regions in humans inferred from patterns of polymorphism and divergence

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12 September 2017

Evolution of regulatory sequences in 12 Drosophila species

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12 September 2017

Positive selection at the binding sites of the male-specific lethal complex involved in dosage compensation in Drosophila

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12 September 2017

Energy-dependent fitness: a quantitative model for the evolution of yeast transcription factor binding sites

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12 September 2017

Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation

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12 September 2017

Positive and negative selection on noncoding DNA in Drosophila simulans

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12 September 2017

Shape and function of the Bicoid morphogen gradient in dipteran species with different sized embryos

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12 September 2017

Canalization of segmentation and its evolution in Drosophila.

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12 September 2017

Frequent gain and loss of functional transcription factor binding sites

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12 September 2017

Adaptations to fluctuating selection in Drosophila

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12 September 2017

Large-scale discovery of promoter motifs in Drosophila melanogaster

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12 September 2017

A systems approach to measuring the binding energy landscapes of transcription factors

1 reference

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12 September 2017

Large-scale turnover of functional transcription factor binding sites in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084208

12 September 2017

Evolutionary population genetics of promoters: predicting binding sites and functional phylogenies.

1 reference

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12 September 2017

Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084208

12 September 2017

Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084208

12 September 2017

Adaptive protein evolution in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084208

12 September 2017

Positive and negative selection on the human genome

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12 September 2017

Evidence for stabilizing selection in a eukaryotic enhancer element.

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12 September 2017

Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.

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12 September 2017

The eve stripe 2 enhancer employs multiple modes of transcriptional synergy

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3084208

12 September 2017

Population genetics of polymorphism and divergence

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12 September 2017

Structural rules and complex regulatory circuitry constrain expression of a Notch- and EGFR-regulated eye enhancer

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27 September 2017

Identifying signatures of selection at the enhancer of split neurogenic gene complex in Drosophila.

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27 September 2017

Evolutionary dynamics of the enhancer region of even-skipped in Drosophila.

1 reference

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30 May 2018

Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

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30 May 2018

Functional analysis of repressor binding sites in the iab-2 regulatory region of the abdominal-A homeotic gene

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21 January 2018

Rapid restructuring of bicoid-dependent hunchback promoters within and between Dipteran species: implications for molecular coevolution.

1 reference

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21 January 2018

Coevolution in bicoid-dependent promoters and the inception of regulatory incompatibilities among species of higher Diptera.

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21 January 2018

Controlling type-I error of the McDonald-Kreitman test in genomewide scans for selection on noncoding DNA.

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002053

21 January 2018

Adaptive evolution of non-coding DNA in Drosophila

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002053

21 January 2018

Inference of positive and negative selection on the 5' regulatory regions of Drosophila genes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002053

21 January 2018

The McDonald-Kreitman test and slightly deleterious mutations.

1 reference

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21 January 2018

Role for a Drosophila Myb-containing protein complex in site-specific DNA replication.

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21 January 2018

Control of Dopa decarboxylase gene expression by the Broad-Complex during metamorphosis in Drosophila

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002053

21 January 2018

Activation of the knirps locus links patterning to morphogenesis of the second wing vein in Drosophila

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002053

21 January 2018

A transcriptional chain linking eye specification to terminal determination of cone cells in the Drosophila eye

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002053

21 January 2018

Multiple signaling pathways and a selector protein sequentially regulate Drosophila wing development.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002053

21 January 2018

The birth and death of microRNA genes in Drosophila.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002053

21 January 2018

Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002053

21 January 2018

Identifiers

10.1371/JOURNAL.PGEN.1002053

1 reference

Consolidated OpenCitations Corpus – April 2017

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release_pymloc5ugjd7bmo53dztbr7zse

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OpenCitations bibliographic resource ID

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

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Consolidated OpenCitations Corpus – April 2017

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ResearchGate publication ID

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