The role of metadata in reproducible computational research (Q110894741)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:34553169%20AND%20SRC:MED&resulttype=core&format=json

inferred from PubMed Central ID database lookup

12 February 2022

scholarly article

1 reference

based on heuristic

title

The role of metadata in reproducible computational research (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:34553169%20AND%20SRC:MED&resulttype=core&format=json

The role of metadata in reproducible computational research

12 February 2022

main subject

computational research

1 reference

1 reference

0 references

0 references

3

Charles Tapley Hoyt

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:34553169%20AND%20SRC:MED&resulttype=core&format=json

12 February 2022

4

Karthik Ram

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:34553169%20AND%20SRC:MED&resulttype=core&format=json

12 February 2022

5

Jane Greenberg

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:34553169%20AND%20SRC:MED&resulttype=core&format=json

12 February 2022

1

Jeremy Leipzig

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:34553169%20AND%20SRC:MED&resulttype=core&format=json

12 February 2022

2

Daniel Nüst

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:34553169%20AND%20SRC:MED&resulttype=core&format=json

12 February 2022

publication date

10 September 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:34553169%20AND%20SRC:MED&resulttype=core&format=json

12 February 2022

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:34553169%20AND%20SRC:MED&resulttype=core&format=json

12 February 2022

volume

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:34553169%20AND%20SRC:MED&resulttype=core&format=json

12 February 2022

page(s)

100322

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:34553169%20AND%20SRC:MED&resulttype=core&format=json

12 February 2022

issue

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:34553169%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

12 February 2022

DESeq2

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

scikit-learn

object named as

scikit-learn

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

ggplot2

object named as

ggplot2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

1 reference

https://opencitations.net/index/coci/api/v1/citations/10.1093/NAR/GKX1064

Pathway Commons, a web resource for biological pathway data

21 March 2022

1 reference

31 March 2022

https://opencitations.net/index/coci/api/v1/citations/10.1093/NAR/GKQ1039

The BioPAX community standard for pathway data sharing

1 reference

31 March 2022

https://opencitations.net/index/coci/api/v1/citations/10.1038/NBT.1666

KNIME - the Konstanz information miner: version 2.0 and beyond

1 reference

5 April 2022

https://opencitations.net/index/coci/api/v1/citations/10.1145/1656274.1656280

Neurophysiological analytics for all! Free open-source software tools for documenting, analyzing, visualizing, and sharing using electronic notebooks

1 reference

19 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1152/JN.00137.2016

Tool recommender system in Galaxy using deep learning

1 reference

19 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1093/GIGASCIENCE/GIAA152

Reproducibility of computational workflows is automated using continuous analysis

1 reference

19 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1038/NBT.3780

Bioconductor: open software development for computational biology and bioinformatics

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1186/GB-2004-5-10-R80

ProvCaRe: Characterizing scientific reproducibility of biomedical research studies using semantic provenance metadata

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1016/J.IJMEDINF.2018.10.009

The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1186/2041-1480-5-25

Toil enables reproducible, open source, big biomedical data analyses

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1038/NBT.3772

Meta-information concepts for ecological data management

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1016/J.ECOINF.2005.08.004

Journal of Open Source Software (JOSS): design and first-year review

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.7717/PEERJ-CS.147

An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.12688/F1000RESEARCH.23224.2

The FAIR Guiding Principles for scientific data management and stewardship

1 reference

28 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1038/SDATA.2016.18

Open collaborative writing with Manubot

2 references

28 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1371/JOURNAL.PCBI.1007128

27 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1371/JOURNAL.PCBI.1007128

Why most published research findings are false

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1371/JOURNAL.PMED.0020124

An invitation to reproducible computational research

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1093/BIOSTATISTICS/KXQ028

The evaluation of scholarship in academic promotion and tenure processes: Past, present, and future

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.12688/F1000RESEARCH.16493.1

Drug development: Raise standards for preclinical cancer research

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1038/483531A

Open PHACTS: semantic interoperability for drug discovery

1 reference

https://opencitations.net/index/coci/api/v1/citations/10.1016/J.DRUDIS.2012.05.016

The Systems Biology Graphical Notation

29 June 2022

1 reference

7 July 2022

https://opencitations.net/index/coci/api/v1/citations/10.1038/NBT.1558

KEGG: new perspectives on genomes, pathways, diseases and drugs

1 reference

7 July 2022

https://opencitations.net/index/coci/api/v1/citations/10.1093/NAR/GKW1092

The targets R package: a dynamic Make-like function-oriented pipeline toolkit for reproducibility and high-performance computing

1 reference

20 August 2022

https://opencitations.net/index/coci/api/v1/citations/10.21105/JOSS.02959

Software Citation Principles

1 reference

https://opencitations.net/index/coci/api/v1/citations/10.7717/PEERJ-CS.86

Enhanced reproducibility of SADI web service workflows with Galaxy and Docker

25 March 2023

1 reference

https://opencitations.net/index/coci/api/v1/citations/10.1186/S13742-015-0092-3

FAIRsharing as a community approach to standards, repositories and policies

1 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/citations/10.1038/S41587-019-0080-8

DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/citations/10.1093/BIOINFORMATICS/BTW214

Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications

28 October 2023

1 reference

https://opencitations.net/index/coci/api/v1/citations/10.1186/2041-1480-5-28

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level

13 November 2023

1 reference

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1093/BIOINFORMATICS/BTQ415

BioContainers: An open-source and community-driven framework for software standardization

1 reference

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1093/BIOINFORMATICS/BTX192

Identifiers

DOI

10.1016/J.PATTER.2021.100322

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:34553169%20AND%20SRC:MED&resulttype=core&format=json

12 February 2022

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:34553169%20AND%20SRC:MED&resulttype=core&format=json

12 February 2022

1 reference