Jump to content

User:Variantbot/civic/

From Wikidata

< User:Variantbot

CIViC

Purpose

CIViC is a community knowledge base for expert crowdsourcing the clinical interpretation of variants in cancer. Using the Wikidata integrator we are able to synchronize CIViC with Wikidata.

Ontologies used

Sequence ontology

ShEx

(sub) Schema

v t e Wikidata properties related to biological pathway (Q4915012)

Required properties	instance of (P31) CIViC variant ID (P3329) HGVS nomenclature (P3331) biological variant of (P3433) chromosome (P1057)

Optional properties	genomic start (P644) genomic end (P645) positive therapeutic predictor for (P3354) negative therapeutic predictor for (P3355) positive diagnostic predictor for (P3356) negative diagnostic predictor for (P3357) positive prognostic predictor for (P3358) negative prognostic predictor for (P3359)

Reference properties	curator (P1640) retrieved (P813) reference URL (P854) stated in (P248)

qualifier properties	medical condition treated (P2175) statement disputed by (P1310) determination method or standard (P459) rating (P4271)

Primary sources	CIViC database (Q27612411)

External Ontologies	Sequence types and features ontology (Q7452458)

Retrieved from "https://www.wikidata.org/w/index.php?title=User:Variantbot/civic/&oldid=764871892"