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Hello, I'm interested in using wikidata for science, but also in improving wikidata itself with the means of a web user. I have decades of dev experience in various paradigms (main language C++), and will try my hand on batch edits soon. I also have biocurated extensively for GOA and Reactome.

In the manual attempt to create/curate WD items of cleavage products (fragments) of proteins I worked around preproinsulin (Q7240673), angiotensinogen (Q267200), preproghrelin (Q66216544), proglucagon (Q66310097), proopiomelanocortin (Q418896), cerebellin 1 precursor (Q21115606), natriuretic peptide B precursor (Q422288), preproendothelin-1 (Q66361339), apelin (Q2386988), protachykinin-1 (Q21123080), Secretogranin II (Q21105303), thymosin beta 4 (Q7799643), prepro-VIP (Q66499176), neurosecretory protein VGF (Q21122290), augurin precursor (Q66535298), chromogranin A (Q3698322), CAP-18 propeptide (Q411181)

What I'm doing is roughly this:

  • if gene and protein is in one item, duplicate to get separate items (moving sitelinks first to the protein)
  • remove wrong statements on either (e.g. no PDB/protein IDs/GOA function/localization annotations on genes), make sure the gene has at the most GO process annotations
  • create/check all relevant fragment objects, move statements to the resp. item: EnsemblP should be on prepro/pro
  • separate out aliases to resp. objects
  • add "has part" with all fragments to prepro object
  • complete "encodes/encoded by" everywhere
  • add "exact match" qualifier to fragment UniProt like e.g.
  • add Reactome, ChEBI, ChemBL, IUPHAR IDs to fragment if existing (Reactome labels like GENE(1-100) also to fragment aliases)
  • add "part of" Reactome process or reaction if missing
  • (maybe) move GOA function annotations to resp. fragment if applicable


{{section resolved|~~~~}} {{Q|21105303}}