Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line (Q89321458)

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3 April 2020

title

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line (English)

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Maria Nattestad

1

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Sara Goodwin

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Karen Ng

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Timour Baslan

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Philipp Rescheneder

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Tyler Garvin

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Han Fang

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James Gurtowski

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Elizabeth Hutton

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Elizabeth Tseng

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Chen-Shan Chin

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Timothy Beck

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Yogi Sundaravadanam

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Melissa Kramer

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Eric Antoniou

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John D McPherson

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James Hicks

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W Richard McCombie

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publication date

28 June 2018

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language of work or name

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volume

28

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issue

8

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page(s)

1126-1135

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The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations

3 April 2020

cites work

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12 December 2020

A census of human cancer genes

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12 December 2020

Circular binary segmentation for the analysis of array-based DNA copy number data

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12 December 2020

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

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12 December 2020

A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes

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12 December 2020

The impact of translocations and gene fusions on cancer causation

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12 December 2020

DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome

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12 December 2020

Targeting HER2-positive breast cancer with trastuzumab-DM1, an antibody-cytotoxic drug conjugate

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12 December 2020

Real-time DNA sequencing from single polymerase molecules

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12 December 2020

The Sequence Alignment/Map format and SAMtools

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12 December 2020

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12 December 2020

BEDTools: a flexible suite of utilities for comparing genomic features

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12 December 2020

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12 December 2020

Identification of fusion genes in breast cancer by paired-end RNA-sequencing

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12 December 2020

Hallmarks of Cancer: The Next Generation

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12 December 2020

Tumour evolution inferred by single-cell sequencing

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12 December 2020

Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes

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12 December 2020

A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines

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12 December 2020

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

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12 December 2020

Trastuzumab Produces Therapeutic Actions by Upregulating miR-26a and miR-30b in Breast Cancer Cells

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12 December 2020

The life history of 21 breast cancers

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12 December 2020

Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score

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12 December 2020

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12 December 2020

DELLY: structural variant discovery by integrated paired-end and split-read analysis

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BreakTrans: uncovering the genomic architecture of gene fusions

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12 December 2020

Emerging patterns of somatic mutations in cancer

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12 December 2020

A single-molecule long-read survey of the human transcriptome

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12 December 2020

Mutational landscape and significance across 12 major cancer types

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12 December 2020

Association of a germline copy number polymorphism of APOBEC3A and APOBEC3B with burden of putative APOBEC-dependent mutations in breast cancer

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12 December 2020

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Resolving the complexity of the human genome using single-molecule sequencing

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12 December 2020

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12 December 2020

Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing.

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12 December 2020

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Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing

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12 December 2020

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12 December 2020

GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality

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12 December 2020

Resolving complex structural genomic rearrangements using a randomized approach

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12 December 2020

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12 December 2020

Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing

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12 December 2020

De novo assembly and phasing of a Korean human genome

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12 December 2020

Phased diploid genome assembly with single-molecule real-time sequencing.

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12 December 2020

Discovery and genotyping of structural variation from long-read haploid genome sequence data.

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12 December 2020

Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast

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12 December 2020

DangerTrack: A scoring system to detect difficult-to-assess regions

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12 December 2020

Accurate detection of complex structural variations using single-molecule sequencing

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12 December 2020

Identifiers

DOI

10.1101/GR.231100.117

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3 April 2020

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3 April 2020

PubMed publication ID

29954844

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