PDBe: Protein Data Bank in Europe (Q57004657)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

title

PDBe: Protein Data Bank in Europe (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

Alan Wilter Sousa da Silva

11 February 2020

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Anne Pajon

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Sanchayita Sen

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Jawahar Swaminathan

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Glen van Ginkel

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Wim F. Vranken

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

Gerard Kleywegt

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

20

A Suarez-Uruena

1 reference

11 February 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

C Best

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

B Beuth

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

C H Boutselakis

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

N Cobley

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

D Dimitropoulos

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

A Golovin

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

M Hirshberg

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

M John

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

E B Krissinel

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

R Newman

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

T Oldfield

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

C J Penkett

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

J Pineda-Castillo

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

G Sahni

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

R Slowley

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

K Henrick

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

publication date

25 October 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

language of work or name

English

0 references

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

volume

38

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

issue

Database issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

page(s)

D308-17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

E-MSD: improving data deposition and structure quality

11 February 2020

cites work

1 reference

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The RCSB PDB information portal for structural genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

The Protein Data Bank: a historical perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

Data growth and its impact on the SCOP database: new developments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

The Universal Protein Resource (UniProt) 2009

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

InterPro: the integrative protein signature database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

21 January 2018

The 20 years of PROSITE

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

The GOA database in 2009--an integrated Gene Ontology Annotation resource

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

Searching the medical literature using PubMed: a tutorial

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

PatMatch: a program for finding patterns in peptide and nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

The CCPN project: an interim report on a data model for the NMR community

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

A framework for scientific data modeling and automated software development

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

A nomenclature and data model to describe NMR experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

The CCPN data model for NMR spectroscopy: development of a software pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

New electron microscopy database and deposition system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

Bioimage informatics for experimental biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

Remediation of the protein data bank archive

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

Inference of macromolecular assemblies from crystalline state

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

EMDep: a web-based system for the deposition and validation of high-resolution electron microscopy macromolecular structural information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

The distributed annotation system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

Sites for phosphates and iron-sulfur thiolates in the first membranes: 3 to 6 residue anion-binding motifs (nests).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

Beta-bulges within loops as recurring features of protein structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

The conformations of polypeptide chains where the main-chain parts of successive residues are enantiomeric. Their occurrence in cation and anion-binding regions of proteins 1 1 Edited by J. Thornton

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

Mimicry by asx- and ST-turns of the four main types of beta-turn in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

Rapid and sensitive protein similarity searches

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

MSDmotif: exploring protein sites and motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

GeneCensus: genome comparisons in terms of metabolic pathway activity and protein family sharing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

Touring protein fold space with Dali/FSSP

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

3Dee: a database of protein structural domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

ProtoMap: automatic classification of protein sequences and hierarchy of protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

BioMagResBank databases DOCR and FRED containing converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

A global analysis of NMR distance constraints from the PDB.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

An automated approach for defining core atoms and domains in an ensemble of NMR-derived protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP916

Relationship between chemical shift value and accessible surface area for all amino acid atoms.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808887

Chemical substructure search in SQL.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808887

E-MSD: an integrated data resource for bioinformatics

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808887

Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808887

The Uppsala Electron-Density Server

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808887

A novel main-chain anion-binding site in proteins: the nest. A particular combination of phi,psi values in successive residues gives rise to anion-binding sites that occur commonly and are found often at functionally important regions

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808887

OLDERADO: on-line database of ensemble representatives and domains. On Line Database of Ensemble Representatives And DOmains

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808887

The Protein Data Bank: a computer-based archival file for macromolecular structures

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808887

COCO: A simple tool to enrich the representation of conformational variability in NMR structures

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808887

Common ring motifs in proteins involving asparagine or glutamine amide groups hydrogen-bonded to main-chain atoms

30 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19858099

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An automated approach for clustering an ensemble of NMR-derived protein structures into conformationally related subfamilies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19858099

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

MSDsite: a database search and retrieval system for the analysis and viewing of bound ligands and active sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19858099

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKP916

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/VelankarBBBCSDGHJKNOPPPSSSSSGVHK10

11 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19858099%20AND%20SRC:MED&resulttype=core&format=json

11 February 2020

PubMed publication ID

19858099

1 reference