Tissue-Specific Transcriptome for Poeciliopsis prolifica Reveals Evidence for Genetic Adaptation Related to the Evolution of a Placental Fish. (Q55427470)

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English	Tissue-Specific Transcriptome for Poeciliopsis prolifica Reveals Evidence for Genetic Adaptation Related to the Evolution of a Placental Fish.	scientific article

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scholarly article

1 reference

Europe PubMed Central

9 July 2018

http://europepmc.org/abstract/PMC/6027864

Tissue-Specific Transcriptome for Poeciliopsis prolifica Reveals Evidence for Genetic Adaptation Related to the Evolution of a Placental Fish. (English)

1 reference

Europe PubMed Central

9 July 2018

http://europepmc.org/abstract/PMC/6027864

0 references

Poeciliopsis prolifica

object named as

Poeciliopsis prolifica

1 reference

based on heuristic

inferred from title

genetic adaptation

1 reference

based on heuristic

inferred from title

David N. Reznick

object named as

David N Reznick

3

0 references

author name string

Nathaniel K Jue

1

1 reference

Europe PubMed Central

9 July 2018

http://europepmc.org/abstract/PMC/6027864

Robert J Foley

2

1 reference

Europe PubMed Central

9 July 2018

http://europepmc.org/abstract/PMC/6027864

Rachel J O'Neill

4

1 reference

Europe PubMed Central

9 July 2018

http://europepmc.org/abstract/PMC/6027864

Michael J O'Neill

5

1 reference

Europe PubMed Central

9 July 2018

http://europepmc.org/abstract/PMC/6027864

publication date

2 July 2018

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Europe PubMed Central

9 July 2018

http://europepmc.org/abstract/PMC/6027864

1 reference

Europe PubMed Central

9 July 2018

http://europepmc.org/abstract/PMC/6027864

8

1 reference

Europe PubMed Central

9 July 2018

http://europepmc.org/abstract/PMC/6027864

2181-2192

1 reference

Europe PubMed Central

9 July 2018

http://europepmc.org/abstract/PMC/6027864

7

1 reference

Europe PubMed Central

9 July 2018

http://europepmc.org/abstract/PMC/6027864

describes a project that uses

object named as

DEseq2

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

0 references

Identification of real microRNA precursors with a pseudo structure status composition approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Identification of a gonad-expression differential gene insulin-like growth factor-1 receptor (Igf1r) in the swamp eel (Monopterus albus).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Paleovirology of 'syncytins', retroviral env genes exapted for a role in placentation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits

1 reference

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9 July 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Streaming fragment assignment for real-time analysis of sequencing experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Transposable element recruitments in the mammalian placenta: impacts and mechanisms.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Fast gapped-read alignment with Bowtie 2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Full-length transcriptome assembly from RNA-Seq data without a reference genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Analysis of expressed sequence tags from the placenta of the live-bearing fish Poeciliopsis (Poeciliidae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

GRAMD4 mimics p53 and mediates the apoptotic function of p73 at mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

The placenta: transcriptional, epigenetic, and physiological integration during development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Network visualization and analysis of gene expression data using BioLayout Express(3D).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Unearthing the roles of imprinted genes in the placenta.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

The function of non-coding RNAs in genomic imprinting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

The loci of evolution: how predictable is genetic evolution?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Resurrecting the role of transcription factor change in developmental evolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

PAML 4: phylogenetic analysis by maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Evolution of the placenta in eutherian mammals.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Many genes in fish have species-specific asymmetric rates of molecular evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

A novel protein Depp, which is induced by progesterone in human endometrial stromal cells activates Elk-1 transcription factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

The C2 domains of the class I Rab11 family of interacting proteins target recycling vesicles to the plasma membrane.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

The RCP-Rab11 complex regulates endocytic protein sorting

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

MUSCLE: multiple sequence alignment with high accuracy and high throughput

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Rab11-FIP4 interacts with Rab11 in a GTP-dependent manner and its overexpression condenses the Rab11 positive compartment in HeLa cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

A retrotransposon-derived gene, PEG10, is a novel imprinted gene located on human chromosome 7q21

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Repeat polymorphisms within gene regions: phenotypic and evolutionary implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

9 July 2018

Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

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A comparative study of the corpus luteum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

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"GRANDFATHER EFFECTS": THE GENETICS OF INTERPOPULATION DIFFERENCES IN OFFSPRING SIZE IN THE MOSQUITO FISH.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

12 August 2018

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12 August 2018

Using MCL to extract clusters from networks.

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12 August 2018

Interpopulation variation in life-history traits of Poeciliopsis prolifica: implications for the study of placental evolution.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6027864

12 August 2018

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12 August 2018

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12 August 2018

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12 August 2018

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https://pubmed.ncbi.nlm.nih.gov/29720394

12 December 2020

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The follicular placenta of the viviparous fish, Heterandria formosa. I. Ultrastructure and development of the embryonic absorptive surface

1 reference

https://pubmed.ncbi.nlm.nih.gov/29720394

12 December 2020

based on heuristic

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Identifiers

10.1534/G3.118.200270

1 reference

Europe PubMed Central

9 July 2018

http://europepmc.org/abstract/PMC/6027864

1 reference

Europe PubMed Central

9 July 2018

http://europepmc.org/abstract/PMC/6027864

1 reference

Europe PubMed Central

9 July 2018

http://europepmc.org/abstract/PMC/6027864

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