The Rosa genome provides new insights into the domestication of modern roses. (Q52801492)

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25 March 2020

title

The Rosa genome provides new insights into the domestication of modern roses (English)

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2

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Marion Verdenaud

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Ludovic Cottret

14

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Teva Vernoux

35

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Jérémy Just

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Helene Badouin

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Sébastien Carrere

11

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Jean-Claude Caissard

12

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Jean-Marc Aury

15

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Annick Dubois

22

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Antoine Larrieu

24

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Michiel Vandenbussche

36

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Hadi Quesneville

37

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Adnane Boualem

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Chang Liu

40

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Sylvie Baudino

43

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Mohammed Bendahmane

46

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23

Florence Piola

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25 March 2020

author name string

Olivier Raymond

1

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Arnaud Lemainque

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Philippe Vergne

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Sandrine Moja

8

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Nathalie Choisne

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Caroline Pont

10

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Arnaud Couloux

13

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Judit Szécsi

16

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David Latrasse

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Mohammed-Amin Madoui

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Léa François

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Xiaopeng Fu

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Shu-Hua Yang

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Magali Perez

25

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Karine Labadie

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Lauriane Perrier

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Benjamin Govetto

28

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Yoan Labrousse

29

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Priscilla Villand

30

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Claudia Bardoux

31

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Véronique Boltz

32

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Céline Lopez-Roques

33

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Pascal Heitzler

34

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Abdelhafid Bendahmane

39

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Manuel Le Bris

41

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25 March 2020

Jérôme Salse

42

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Moussa Benhamed

44

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Patrick Wincker

45

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25 March 2020

language of work or name

English

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publication date

30 April 2018

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full work available at URL

25 March 2020

http://eprints.whiterose.ac.uk/136253

content deliverer

White Rose Research Online

copyright license

Creative Commons Attribution 4.0 International

object has role

published version

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White Rose Research Online

http://eprints.whiterose.ac.uk/136253

15 December 2018

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25 March 2020

volume

50

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25 March 2020

page(s)

772-777

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25 March 2020

issue

6

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Creative Commons Attribution 4.0 International

25 March 2020

copyright license

start time

30 April 2018

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April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

RStudio

1 reference

18 June 2022

https://europepmc.org/article/PMC/5984618

based on heuristic

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/s41588-018-0110-3

0 references

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PLANT VOLATILES. Biosynthesis of monoterpene scent compounds in roses.

29 September 2018

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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

29 September 2018

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29 September 2018

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Progressive regulation of sesquiterpene biosynthesis in Arabidopsis and Patchouli (Pogostemon cablin) by the miR156-targeted SPL transcription factors.

29 September 2018

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Phylogeny and biogeography of wild roses with specific attention to polyploids

29 September 2018

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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement

29 September 2018

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Genome-wide analysis of local chromatin packing in Arabidopsis thaliana.

29 September 2018

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The small RNA diversity from Medicago truncatula roots under biotic interactions evidences the environmental plasticity of the miRNAome

29 September 2018

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29 September 2018

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ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases

29 September 2018

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miRBase: annotating high confidence microRNAs using deep sequencing data

29 September 2018

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PlantTFcat: an online plant transcription factor and transcriptional regulator categorization and analysis tool

29 September 2018

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Differential control of seed primary dormancy in Arabidopsis ecotypes by the transcription factor SPATULA

29 September 2018

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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

29 September 2018

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Genetics and genomics of flower initiation and development in roses

29 September 2018

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PAP1 transcription factor enhances production of phenylpropanoid and terpenoid scent compounds in rose flowers.

29 September 2018

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Fast gapped-read alignment with Bowtie 2

29 September 2018

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Genomic approach to study floral development genes in Rosa sp

29 September 2018

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The TFL1 homologue KSN is a regulator of continuous flowering in rose and strawberry.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

An efficient and rapid protocol for plant nuclear DNA preparation suitable for next generation sequencing methods

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

Negative regulation of anthocyanin biosynthesis in Arabidopsis by a miR156-targeted SPL transcription factor

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

Considering transposable element diversification in de novo annotation approaches

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

29 September 2018

1 reference

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The genome of woodland strawberry (Fragaria vesca)

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

seqMINER: an integrated ChIP-seq data interpretation platform

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

Translationally controlled tumor protein is a conserved mitotic growth integrator in animals and plants

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

An R2R3 MYB transcription factor associated with regulation of the anthocyanin biosynthetic pathway in Rosaceae

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

Tinkering with the C-function: a molecular frame for the selection of double flowers in cultivated roses

29 September 2018

1 reference

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BEDTools: a flexible suite of utilities for comparing genomic features

29 September 2018

1 reference

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Fast and accurate long-read alignment with Burrows-Wheeler transform

29 September 2018

1 reference

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Circos: an information aesthetic for comparative genomics

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

Model-based analysis of ChIP-Seq (MACS)

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

Sequencing and assembly of highly heterozygous genome of Vitis vinifera L. cv Pinot Noir: problems and solutions.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

adegenet: a R package for the multivariate analysis of genetic markers

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

Combined evidence annotation of transposable elements in genome sequences

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

Repbase Update, a database of eukaryotic repetitive elements

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

Gain and loss of fruit flavor compounds produced by wild and cultivated strawberry species

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

Identification of cut rose (Rosa hybrida) and rootstock varieties using robust sequence tagged microsatellite site markers.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

Control of flowering time: interacting pathways as a basis for diversity

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

Microspore embryogenesis and in vitro pollen maturation in tobacco

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

Tandem repeats finder: a program to analyze DNA sequences

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5984618

On lines and planes of closest fit to systems of points in space

29 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41588-018-0110-3

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/S41588-018-0110-3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29713014%20AND%20SRC:MED&resulttype=core&format=json

10.1038/S41588-018-0110-3

25 March 2020

Altmetric DOI

0 references

CORE ID

157842107

0 references

Dimensions Publication ID

1103683148

0 references

Microsoft Academic ID

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29713014%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29713014%20AND%20SRC:MED&resulttype=core&format=json