Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis. (Q49607235)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29273624%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

title

Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis (English)

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8 April 2020

3

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Hector L Franco

1

1 reference

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8 April 2020

author name string

Anusha Nagari

2

1 reference

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8 April 2020

Wenqian Li

4

1 reference

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8 April 2020

Yuanxin Xi

5

1 reference

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8 April 2020

Dana Richardson

6

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8 April 2020

Kendra L Allton

7

1 reference

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8 April 2020

Kaori Tanaka

8

1 reference

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8 April 2020

Jing Li

9

1 reference

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8 April 2020

Shino Murakami

10

1 reference

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8 April 2020

Khandan Keyomarsi

11

1 reference

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8 April 2020

Mark T Bedford

12

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8 April 2020

Xiaobing Shi

13

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8 April 2020

Wei Li

14

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8 April 2020

Michelle C Barton

15

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8 April 2020

Sharon Y R Dent

16

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8 April 2020

W Lee Kraus

17

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8 April 2020

publication date

22 December 2017

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8 April 2020

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8 April 2020

volume

28

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8 April 2020

issue

2

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8 April 2020

page(s)

159-170

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Cross-validation of survival associated biomarkers in gastric cancer using transcriptomic data of 1,065 patients

8 April 2020

cites work

1 reference

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Functional Genomic Landscape of Human Breast Cancer Drivers, Vulnerabilities, and Resistance

2 November 2018

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Fra-1 is a key driver of colon cancer metastasis and a Fra-1 classifier predicts disease-free survival

2 November 2018

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JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

2 November 2018

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Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer

2 November 2018

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No Driver behind the Wheel? Targeting Transcription in Cancer

2 November 2018

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Architectural and Functional Commonalities between Enhancers and Promoters

2 November 2018

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Discovery, Annotation, and Functional Analysis of Long Noncoding RNAs Controlling Cell-Cycle Gene Expression and Proliferation in Breast Cancer Cells

2 November 2018

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groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing data

2 November 2018

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TNFα signaling exposes latent estrogen receptor binding sites to alter the breast cancer cell transcriptome

2 November 2018

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Aberrantly expressed Fra-1 by IL-6/STAT3 transactivation promotes colorectal cancer aggressiveness through epithelial–mesenchymal transition

2 November 2018

1 reference

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The selection and function of cell type-specific enhancers

2 November 2018

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Inflammation-sensitive super enhancers form domains of coordinately regulated enhancer RNAs

2 November 2018

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CDK7 inhibition suppresses super-enhancer-linked oncogenic transcription in MYCN-driven cancer.

2 November 2018

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Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers

2 November 2018

1 reference

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FRA-1 as a driver of tumour heterogeneity: a nexus between oncogenes and embryonic signalling pathways in cancer

2 November 2018

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Fra-1/AP-1 induces EMT in mammary epithelial cells by modulating Zeb1/2 and TGFβ expression

2 November 2018

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Transcription factor PREP1 induces EMT and metastasis by controlling the TGF-β-SMAD3 pathway in non-small cell lung adenocarcinoma

2 November 2018

1 reference

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Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma

2 November 2018

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Genome-wide profiling of AP-1-regulated transcription provides insights into the invasiveness of triple-negative breast cancer.

2 November 2018

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Widespread FRA1-dependent control of mesenchymal transdifferentiation programs in colorectal cancer cells

2 November 2018

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Transcriptional enhancers: from properties to genome-wide predictions

2 November 2018

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Dynamic reorganization of the AC16 cardiomyocyte transcriptome in response to TNFα signaling revealed by integrated genomic analyses

2 November 2018

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Long noncoding RNAs usher in a new era in the biology of enhancers

2 November 2018

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Forkhead box proteins: tuning forks for transcriptional harmony.

2 November 2018

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Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation

2 November 2018

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Enhancer transcripts mark active estrogen receptor binding sites

2 November 2018

1 reference

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Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells

2 November 2018

1 reference

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Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions

2 November 2018

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Identifying ChIP-seq enrichment using MACS.

2 November 2018

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FOXC1 regulates the functions of human basal-like breast cancer cells by activating NF-κB signaling

2 November 2018

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2 November 2018

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Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA

2 November 2018

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A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells

2 November 2018

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Forkhead transcription factors: key players in health and disease

2 November 2018

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GOBO: gene expression-based outcome for breast cancer online

2 November 2018

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FOXA1 is a key determinant of estrogen receptor function and endocrine response

2 November 2018

1 reference

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FOXA1 is an essential determinant of ERalpha expression and mammary ductal morphogenesis

2 November 2018

1 reference

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A large fraction of extragenic RNA pol II transcription sites overlap enhancers

2 November 2018

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

2 November 2018

1 reference

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FOXC1 is a potential prognostic biomarker with functional significance in basal-like breast cancer

2 November 2018

1 reference

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Widespread transcription at neuronal activity-regulated enhancers

2 November 2018

1 reference

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Fast and accurate long-read alignment with Burrows-Wheeler transform

2 November 2018

1 reference

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AP-1--The Jun proteins: Oncogenes or tumor suppressors in disguise?

2 November 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

2 November 2018

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MEME SUITE: tools for motif discovery and searching

2 November 2018

1 reference

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Histone modifications at human enhancers reflect global cell-type-specific gene expression

2 November 2018

1 reference

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TopHat: discovering splice junctions with RNA-Seq

2 November 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

2 November 2018

1 reference

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Gene-expression signatures in breast cancer

2 November 2018

1 reference

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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

2 November 2018

1 reference

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Deciphering AP-1 function in tumorigenesis: fra-ternizing on target promoters

2 November 2018

1 reference

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PLAG1, the prototype of the PLAG gene family: versatility in tumour development (review)

2 November 2018

1 reference

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Quantifying similarity between motifs

2 November 2018

1 reference

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

2 November 2018

1 reference

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A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes

2 November 2018

1 reference

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LOT1 (ZAC1/PLAGL1) and its family members: mechanisms and functions

2 November 2018

1 reference

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Fra-1 a target for cancer prevention or intervention

2 November 2018

1 reference

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Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)

2 November 2018

1 reference

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Gene expression profiling of breast cell lines identifies potential new basal markers.

2 November 2018

1 reference

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AP-1: a double-edged sword in tumorigenesis

2 November 2018

1 reference

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AP-1 as a regulator of cell life and death

2 November 2018

1 reference

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Molecular portraits of human breast tumours

2 November 2018

1 reference

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Promoter swapping between the genes for a novel zinc finger protein and beta-catenin in pleiomorphic adenomas with t(3;8)(p21;q12) translocations

2 November 2018

1 reference

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Nonparametric estimation of lifetime and disease onset distributions from incomplete observations

2 November 2018

1 reference

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2 November 2018

Identifiers

DOI

10.1101/GR.226019.117

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29273624%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29273624%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

PubMed publication ID

29273624

1 reference