WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research (Q42896569)

20

0 references

Alexander R. Pico

21

0 references

Lars Eijssen

19

Lars M.T. Eijssen

0 references

Andra Waagmeester

18

Andra Waagmeester

0 references

Martina Summer-Kutmon

2

Martina Kutmon

0 references

Kristina Hanspers

3

0 references

Elisa Cirillo

8

Elisa Cirillo

0 references

Susan Coort

9

0 references

Friederike Ehrhart

11

Friederike Ehrhart

0 references

Ryan Miller

15

Ryan Miller

0 references

Daniela Digles

Daniela Digles

10

0 references

Denise Slenter

1

Denise N. Slenter

0 references

Anders Riutta

Anders Riutta

4

0 references

Marvin Martens

Marvin Martens

14

0 references

Jonathan Mélius

Jonathan Mélius

7

0 references

Kristina Hanspers

3

Kristina Hanspers

0 references

Alexander R. Pico

21

Alexander R. Pico

0 references

Nuno Nunes

6

Nuno Nunes

0 references

Linda Rieswijk

Linda Rieswijk

17

0 references

Pieter Giesbertz

12

Pieter Giesbertz

0 references

Kozo Nishida

16

Kozo Nishida

0 references

author name string

Marianthi Kalafati

13

0 references

Jacob Windsor

Creative Commons Attribution 4.0 International

5

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publication date

4 January 2018

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language of work or name

English

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number of pages

7

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published in

Nucleic Acids Research

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volume

46

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issue

D1

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page(s)

D661–D667

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copyright license

start time

10 November 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

WikiPathways: pathway editing for the people

extends the cited work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networks

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

The application of the open pharmacological concepts triple store (Open PHACTS) to support drug discovery research

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

The Reactome pathway Knowledgebase

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

KEGG: new perspectives on genomes, pathways, diseases and drugs

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

Recon 2.2: from reconstruction to model of human metabolism

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

Pathway Commons, a web resource for biological pathway data

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

The ConsensusPathDB interaction database: 2013 update

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

Biotransformation pathway maps in WikiPathways enable direct visualization of drug metabolism related expression changes

27 May 2018

obtains background from cited work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

Integration of targeted metabolomics and transcriptomics identifies deregulation of phosphatidylcholine metabolism in Huntington's disease peripheral blood samples

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

A transcriptomics data-driven gene space accurately predicts liver cytopathology and drug-induced liver injury

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

Bayesian model of signal rewiring reveals mechanisms of gene dysregulation in acquired drug resistance in breast cancer

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

Identifying known unknowns using the US EPA's CompTox Chemistry Dashboard

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

The metabolome 18 years on: a concept comes of age

27 May 2018

obtains background from cited work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources

27 May 2018

extends the cited work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

Reactome from a WikiPathways Perspective

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

The FAIR Guiding Principles for scientific data management and stewardship

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

WikiPathways: capturing the full diversity of pathway knowledge

27 May 2018

extends the cited work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

ChEBI in 2016: Improved services and an expanding collection of metabolites

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

PathVisio 3: an extendable pathway analysis toolbox

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

HMDB 3.0--The Human Metabolome Database in 2013

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

Mining and integration of pathway diagrams from imaging data

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

KNApSAcK Family Databases: Integrated Metabolite-Plant Species Databases for Multifaceted Plant Research

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

Update of the LIPID MAPS comprehensive classification system for lipids

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753270

Enabling Open Science: Wikidata for Research (Wiki4R)

27 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKX1064

journals/nar/SlenterKHRW0MCC18

21 January 2018

Identifiers

DOI

10.1093/NAR/GKX1064

0 references

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02