STAP Refinement of the NMR database: a database of 2405 refined solution NMR structures (Q39974623)

16 September 2017

STAP Refinement of the NMR database: a database of 2405 refined solution NMR structures (English)

1 reference

16 September 2017

0 references

Joshua SungWoo Yang

1

1 reference

16 September 2017

Ji-han Kim

2

1 reference

16 September 2017

Sangho Oh

3

1 reference

16 September 2017

Gukjeong Han

4

1 reference

16 September 2017

Sanghyuk Lee

5

1 reference

16 September 2017

Jinhyuk Lee

6

1 reference

16 September 2017

18 November 2011

1 reference

16 September 2017

Nucleic Acids Research

1 reference

16 September 2017

40

1 reference

16 September 2017

Database issue

1 reference

16 September 2017

D525-30

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

16 September 2017

start time

12 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Biomolecules in the computer: Jmol to the rescue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

The RCSB Protein Data Bank: redesigned web site and web services

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

Straightforward and complete deposition of NMR data to the PDBe

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

KING (Kinemage, Next Generation): a versatile interactive molecular and scientific visualization program

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

CHARMM: the biomolecular simulation program

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

Statistical potential for assessment and prediction of protein structures

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

The difference between protein structures that are obtained by X-ray analysis and magnetic resonance spectroscopy

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

Structural quality assurance

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

Refinement of protein structures in explicit solvent

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

Completeness of NOEs in protein structure: a statistical analysis of NMR.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

Effective energy function for proteins in solution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

New methods of structure refinement for macromolecular structure determination by NMR.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

Improving the quality of NMR and crystallographic protein structures by means of a conformational database potential derived from structure databases

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

Errors in protein structures

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

Specific interactions for ab initio folding of protein terminal regions with secondary structures.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

Estimating quality of template-based protein models by alignment stability.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

Refinement of NMR structures using implicit solvent and advanced sampling techniques

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

DRESS: a database of REfined solution NMR structures.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

Torsion-angle molecular dynamics as a new efficient tool for NMR structure calculation.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245188

Combining experimental information from crystal and solution studies: joint X-ray and NMR refinement

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22102572

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Improving the quality of protein structures derived by NMR spectroscopy

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22102572

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKR1021

1 reference

16 September 2017

journals/nar/YangKOHLL12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

16 September 2017

PubMed publication ID

22102572

1 reference