Microbial community genomics in the ocean (Q36123645)

12 August 2017

title

Microbial community genomics in the ocean (English)

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12 August 2017

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1

Edward F DeLong

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12 August 2017

publication date

1 June 2005

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Nature Reviews Microbiology

12 August 2017

language of work or name

English

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published in

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12 August 2017

volume

3

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12 August 2017

issue

6

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12 August 2017

page(s)

459-469

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publication type of scholarly work

12 August 2017

review article

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Microbial ecology and evolution: a ribosomal RNA approach

cites work

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

A molecular view of microbial diversity and the biosphere

21 January 2018

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The Uncultured Microbial Majority

21 January 2018

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Microbial seascapes revisited

21 January 2018

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Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome

21 January 2018

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Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation

21 January 2018

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The genome of a motile marine Synechococcus

21 January 2018

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Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1158

Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1158

Comparative genome analysis of Vibrio vulnificus, a marine pathogen

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1158

Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1158

Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1158

The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Complete genome sequence of the marine planctomycete Pirellula sp. strain 1

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Life at Depth: Photobacterium profundum Genome Sequence and Expression Analysis

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1158

Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1158

The genome of M. acetivorans reveals extensive metabolic and physiological diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Complete Genome Sequence of the Genetically Tractable Hydrogenotrophic Methanogen Methanococcus maripaludis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Bacterial rhodopsin: evidence for a new type of phototrophy in the sea

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Unsuspected diversity among marine aerobic anoxygenic phototrophs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Genomic analysis of uncultured marine viral communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Proteorhodopsin genes are distributed among divergent marine bacterial taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Different SAR86 subgroups harbour divergent proteorhodopsins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Characterization of large-insert DNA libraries from soil for environmental genomic studies of Archaea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Analysis of a genome fragment of a deep-sea uncultivated Group II euryarchaeote containing 16S rDNA, a spectinomycin-like operon and several energy metabolism genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

First insight into the genome of an uncultivated crenarchaeote from soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Metagenomics: genomic analysis of microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Reverse methanogenesis: testing the hypothesis with environmental genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Comparative metagenomics of microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Microbial population genomics and ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Approaches to prokaryotic biodiversity: a population genetics perspective.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

To BAC or not to BAC: marine ecogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

50 Million Years of Genomic Stasis in Endosymbiotic Bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Community structure and metabolism through reconstruction of microbial genomes from the environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

On the sequencing of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Roseobacter-like bacteria in red and mediterranean sea aerobic anoxygenic photosynthetic populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Novel Proteorhodopsin variants from the Mediterranean and Red Seas.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Diversification and spectral tuning in marine proteorhodopsins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Proteorhodopsin phototrophy in the ocean.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Genomics and evolution. Shotgun sequencing in the sea: a blast from the past?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Environmental genome shotgun sequencing of the Sargasso Sea

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

A conspicuous nickel protein in microbial mats that oxidize methane anaerobically

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Application of tetranucleotide frequencies for the assignment of genomic fragments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Darwinian adaptation of proteorhodopsin to different light intensities in the marine environment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Detection of fast light-activated H+ release and M intermediate formation from proteorhodopsin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Proteorhodopsin is a light-driven proton pump with variable vectoriality

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Proton transfers in the photochemical reaction cycle of proteorhodopsin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Spectroscopic and photochemical characterization of a deep ocean proteorhodopsin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

The influence of water on the photochemical reaction cycle of proteorhodopsin at low and high pH.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Characterization of RS29, a blue-green proteorhodopsin variant from the Red Sea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Structural changes in the photoactive site of proteorhodopsin during the primary photoreaction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Selectivity of retinal photoisomerization in proteorhodopsin is controlled by aspartic acid 227.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Proton transport by proteorhodopsin requires that the retinal Schiff base counterion Asp-97 be anionic

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Bacterial photosynthesis in surface waters of the open ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Genome organization and localization of the pufLM genes of the photosynthesis reaction center in phylogenetically diverse marine Alphaproteobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Aerobic anoxygenic photosynthesis in Roseobacter clade bacteria from diverse marine habitats

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Genetic diversity in Sargasso Sea bacterioplankton

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Fine-scale phylogenetic architecture of a complex bacterial community.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine Archaea of Group I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

High overall diversity and dominance of microdiverse relationships in salt marsh sulphate-reducing bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Genotypic diversity within a natural coastal bacterioplankton population.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Methane-consuming archaebacteria in marine sediments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Isothermal strand-displacement amplification applications for high-throughput genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Phylogenetic screening of ribosomal RNA gene-containing clones in Bacterial Artificial Chromosome (BAC) libraries from different depths in Monterey Bay.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Contribution of Aerobic Photoheterotrophic Bacteria to the Carbon Cycle in the Ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Archaea in coastal marine environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Comparison between Pyrococcus horikoshii and Pyrococcus abyssi genome sequences reveals linkage of restriction-modification genes with large genome polymorphisms

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Complete Sequence and Gene Organization of the Genome of a Hyper-thermophilic Archaebacterium, Pyrococcus horikoshii OT3

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Complete Genome Sequence of an Aerobic Hyper-thermophilic Crenarchaeon, Aeropyrum pernix K1

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Genomic sequence of hyperthermophile, Pyrococcus furiosus: implications for physiology and enzymology

31 March 2020

2 references

https://api.crossref.org/works/10.1038%2FNRMICRO1158

31 March 2020

https://api.crossref.org/works/10.1038%2FNRMICRO1158

7 January 2021

Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Diversity and population structure of a near-shore marine-sediment viral community

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Characterization of a DNA polymerase from the uncultivated psychrophilic archaeon Cenarchaeum symbiosum

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Metagenomics: application of genomics to uncultured microorganisms

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Nucleotide sequence and expression of a deep-sea ribulose-1,5-bisphosphate carboxylase gene cloned from a chemoautotrophic bacterial endosymbiont

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Towards microbial systems science: integrating microbial perspective, from genomes to biomes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Environmental genomics, the big picture?

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Stable propagation of cosmid sized human DNA inserts in an F factor based vector

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

More on the sequencing of the human genome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Characterization of the photochemical reaction cycle of proteorhodopsin

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

The Photochemical Reaction Cycle of Proteorhodopsin at Low pH

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Proteorhodopsin in living color: diversity of spectral properties within living bacterial cells

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

Methane-Consuming Archaea Revealed by Directly Coupled Isotopic and Phylogenetic Analysis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

A novel delta-subdivision proteobacterial lineage from the lower ocean surface layer

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

7 January 2021

Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

7 January 2021

Screening of a Fosmid Library of Marine Environmental Genomic DNA Fragments Reveals Four Clones Related to Members of the Order Planctomycetales

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

7 January 2021

Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1158

7 January 2021

Identifiers

DOI

10.1038/NRMICRO1158

1 reference

12 August 2017

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