Considerations of transcriptional control mechanisms: Do TFIID–core promoter complexes recapitulate nucleosome-like functions? (Q36035094)

11 August 2017

Considerations of transcriptional control mechanisms: do TFIID-core promoter complexes recapitulate nucleosome-like functions? (English)

1 reference

11 August 2017

Considerations of transcriptional control mechanisms: Do TFIID–core promoter complexes recapitulate nucleosome-like functions? (English)

1 reference

DOI

10.1073/PNAS.94.17.8928

https://api.crossref.org/works/10.1073/PNAS.94.17.8928

11 November 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9256411

11 November 2024

author name string

A. Hoffmann

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9256411

11 November 2024

T. Oelgeschläger

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9256411

11 November 2024

R. G. Roeder

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9256411

11 November 2024

publication date

1 August 1997

1 reference

11 August 2017

19 August 1997

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=9256411

11 November 2024

language of work or name

English

0 references

number of pages

8

1 reference

https://europepmc.org/articles/pmc33761?pdf=render

inferred from page(s)

work available at URL

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9256411

https://europepmc.org/articles/PMC33761

11 November 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9256411

https://europepmc.org/articles/PMC33761?pdf=render

11 November 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A9256411

https://pnas.org/doi/pdf/10.1073/pnas.94.17.8928

11 November 2024

1 reference

DOI

10.1073/PNAS.94.17.8928

https://api.crossref.org/works/10.1073/PNAS.94.17.8928

Proceedings of the National Academy of Sciences of the United States of America

11 November 2024

published in

1 reference

11 August 2017

94

1 reference

11 August 2017

17

1 reference

11 August 2017

8928-8935

1 reference

publication type of scholarly work

11 August 2017

review article

1 reference

The ts13 mutation in the TAF(II)250 subunit (CCG1) of TFIID directly affects transcription of D-type cyclin genes in cells arrested in G1 at the nonpermissive temperature

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Transcriptional activation by recruitment

2 October 2017

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TAFs: guilt by association?

2 October 2017

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Functional antagonism between RNA polymerase II holoenzyme and global negative regulator NC2 in vivo

2 October 2017

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The TAF(II)250 subunit of TFIID has histone acetyltransferase activity

2 October 2017

1 reference

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RSC, an essential, abundant chromatin-remodeling complex

2 October 2017

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The transcriptional coactivators p300 and CBP are histone acetyltransferases

2 October 2017

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The human general co-factors

2 October 2017

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Mediator of transcriptional regulation

2 October 2017

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The role of general initiation factors in transcription by RNA polymerase II

2 October 2017

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Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase

2 October 2017

1 reference

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Histone acetylation and chromatin assembly: a single escort, multiple dances?

2 October 2017

1 reference

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Biochemistry and structural biology of transcription factor IID (TFIID)

2 October 2017

1 reference

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Separation of the transcriptional coactivator and antirepression functions of transcription factor IIA

2 October 2017

1 reference

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Quantitation of putative activator-target affinities predicts transcriptional activating potentials

2 October 2017

1 reference

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A mechanism for repression of class II gene transcription through specific binding of NC2 to TBP-promoter complexes via heterodimeric histone fold domains

2 October 2017

1 reference

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Cloning and characterization of human TAF20/15. Multiple interactions suggest a central role in TFIID complex formation

2 October 2017

1 reference

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Evidence that Spt6p controls chromatin structure by a direct interaction with histones

2 October 2017

1 reference

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Three functional classes of transcriptional activation domain

2 October 2017

1 reference

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Transcription factor IIA mutations show activator-specific defects and reveal a IIA function distinct from stimulation of TBP-DNA binding

2 October 2017

1 reference

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TAFII250 is a bipartite protein kinase that phosphorylates the base transcription factor RAP74

2 October 2017

1 reference

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Biochemistry meets genetics in the holoenzyme

2 October 2017

1 reference

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Synergistic enhancement of both initiation and elongation by acidic transcription activation domains.

2 October 2017

1 reference

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Crystal structure of a yeast TFIIA/TBP/DNA complex

2 October 2017

1 reference

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Repression and activation by multiprotein complexes that alter chromatin structure

2 October 2017

1 reference

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Requirement of a corepressor for Dr1-mediated repression of transcription

2 October 2017

1 reference

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A histone octamer-like structure within TFIID

2 October 2017

1 reference

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2 October 2017

1 reference

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DNA template and activator-coactivator requirements for transcriptional synergism by Drosophila bicoid

2 October 2017

1 reference

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Multiple TAFIIs directing synergistic activation of transcription

2 October 2017

1 reference

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Core promoter-specific function of a mutant transcription factor TFIID defective in TATA-box binding

2 October 2017

1 reference

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Co-crystal structure of TBP recognizing the minor groove of a TATA element

2 October 2017

1 reference

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Crystal structure of a yeast TBP/TATA-box complex

2 October 2017

1 reference

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A glutamine-rich hydrophobic patch in transcription factor Sp1 contacts the dTAFII110 component of the Drosophila TFIID complex and mediates transcriptional activation

2 October 2017

1 reference

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Identification of human DNA topoisomerase I as a cofactor for activator-dependent transcription by RNA polymerase II.

2 October 2017

1 reference

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Genomic footprinting of the promoter regions of STE2 and STE3 genes in the yeast Saccharomyces cerevisiae

2 October 2017

1 reference

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In vivo footprinting of the human IL-2 gene reveals a nuclear factor bound to the transcription start site in T cells

2 October 2017

1 reference

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An RNA polymerase II holoenzyme responsive to activators

2 October 2017

1 reference

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Repression of basal transcription by HMG2 is counteracted by TFIIH-associated factors in an ATP-dependent process

2 October 2017

1 reference

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The high mobility group protein HMG1 can reversibly inhibit class II gene transcription by interaction with the TATA-binding protein

2 October 2017

1 reference

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Promoter structure, promoter recognition, and transcription activation in prokaryotes.

2 October 2017

1 reference

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Binding of TFIID to the CYC1 TATA boxes in yeast occurs independently of upstream activating sequences

2 October 2017

1 reference

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Cryptic DNA-binding domain in the C terminus of RNA polymerase II general transcription factor RAP30.

2 October 2017

1 reference

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Direct recognition of initiator elements by a component of the transcription factor IID complex

2 October 2017

1 reference

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Human TAFII30 is present in a distinct TFIID complex and is required for transcriptional activation by the estrogen receptor

2 October 2017

1 reference

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The requirement for the basal transcription factor IIE is determined by the helical stability of promoter DNA.

2 October 2017

1 reference

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Cloning of an intrinsic human TFIID subunit that interacts with multiple transcriptional activators

2 October 2017

1 reference

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Activation of the TFIID-TFIIA complex with HMG-2

2 October 2017

1 reference

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The RNA polymerase II holoenzyme and its implications for gene regulation

2 October 2017

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Unique TATA-binding protein-containing complexes and cofactors involved in transcription by RNA polymerases II and III

2 October 2017

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Molecular cloning and functional analysis of Drosophila TAF110 reveal properties expected of coactivators

2 October 2017

1 reference

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Crystal structure of a TFIIB-TBP-TATA-element ternary complex

2 October 2017

1 reference

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Genomic footprinting of thehsp70and histone H3 promoters inDrosophilaembryos reveals novel protein-DNA interactions

2 October 2017

1 reference

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Structural basis for DNA bending by the architectural transcription factor LEF-1

2 October 2017

1 reference

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2.1 A resolution refined structure of a TATA box-binding protein (TBP)

2 October 2017

1 reference

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Recycling of the general transcription factors during RNA polymerase II transcription

2 October 2017

1 reference

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Binding of TAFs to core elements directs promoter selectivity by RNA polymerase II

2 October 2017

1 reference

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Mutations on the DNA-binding surface of TATA-binding protein can specifically impair the response to acidic activators in vivo

2 October 2017

1 reference

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TATA-binding protein-associated factor(s) in TFIID function through the initiator to direct basal transcription from a TATA-less class II promoter.

2 October 2017

1 reference

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Multiple factors required for accurate initiation of transcription by purified RNA polymerase II.

2 October 2017

1 reference

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Mechanism and control of transcription initiation in prokaryotes

2 October 2017

1 reference

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Analysis of the role of the transcription factor ATF in the assembly of a functional preinitiation complex

2 October 2017

1 reference

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Transcription factor ATF interacts with the TATA factor to facilitate establishment of a preinitiation complex

2 October 2017

1 reference

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Activation of the adenovirus EIIa late promoter by a single-point mutation which enhances binding of transcription factor IID

2 October 2017

1 reference

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Factors involved in specific transcription by mammalian RNA polymerase II: purification, genetic specificity, and TATA box-promoter interactions of TFIID.

2 October 2017

1 reference

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Cell-type-specific transcription of an immunoglobulin kappa light chain gene in vitro

2 October 2017

1 reference

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Structure and function of bacterial sigma factors

2 October 2017

1 reference

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In vitro transcription of eukaryotic genes is affected differently by the degree of DNA supercoiling

2 October 2017

1 reference

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Sp1 activates transcription without enhancing DNA-binding activity of the TATA box factor

2 October 2017

1 reference

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Stability of transcription complexes on class II genes

2 October 2017

1 reference

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Functional domains and upstream activation properties of cloned human TATA binding protein

2 October 2017

1 reference

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Mechanism of transcriptional activation by Sp1: evidence for coactivators

2 October 2017

1 reference

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Negative supercoiling of DNA facilitates an interaction between transcription factor IID and the fibroin gene promoter

2 October 2017

1 reference

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Mitotic Phosphorylation of the Oct-1 Homeodomain and Regulation of Oct-1 DNA Binding Activity

2 October 2017

1 reference

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DNA superhelicity affects the formation of transcription preinitiation complex on eukaryotic genes differently

2 October 2017

1 reference

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Recombinant TBP, transcription factor IIB, and RAP30 are sufficient for promoter recognition by mammalian RNA polymerase II

2 October 2017

1 reference

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The acidic transcriptional activator GAL-VP16 acts on preformed template-committed complexes

2 October 2017

1 reference

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Dr1, a TATA-binding protein-associated phosphoprotein and inhibitor of class II gene transcription

2 October 2017

1 reference

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The high mobility group protein HMG I(Y) is required for NF-kappa B-dependent virus induction of the human IFN-beta gene

2 October 2017

1 reference

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Selective and accurate transcription of the Xenopus laevis 5S RNA genes in isolated chromatin by purified RNA polymerase III

2 October 2017

1 reference

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Topoisomerase I enhances TFIID-TFIIA complex assembly during activation of transcription

2 October 2017

1 reference

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TAF(II)s mediate activation of transcription in the Drosophila embryo

11 July 2018

1 reference

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Assembly of the isomerized TFIIA--TFIID--TATA ternary complex is necessary and sufficient for gene activation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

TBP-associated factors are not generally required for transcriptional activation in yeast

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Contribution of sequences downstream of the TATA element to a protein-DNA complex containing the TATA-binding protein

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

DNA topoisomerase I is involved in both repression and activation of transcription

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Drosophila TAFII40 interacts with both a VP16 activation domain and the basal transcription factor TFIIB.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Effects of activation-defective TBP mutations on transcription initiation in yeast

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Assembly of recombinant TFIID reveals differential coactivator requirements for distinct transcriptional activators

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

A Drosophila RNA polymerase II transcription factor contains a promoter-region-specific DNA-binding activity

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Interaction of a gene-specific transcription factor with the adenovirus major late promoter upstream of the TATA box region

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Developmental regulation of two 5S ribosomal RNA genes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Physical Analysis of Transcription Preinitiation Complex Assembly on a Class II Gene Promoter

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Factors involved in specific transcription by mammalian RNA polymerase II. Purification and functional analysis of initiation factors IIB and IIE.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Transcriptional regulation by the immediate early protein of pseudorabies virus during in vitro nucleosome assembly

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

The pseudorabies immediate early protein stimulates in vitro transcription by facilitating TFIID: promoter interactions

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Separation and partial characterization of three functional steps in transcription initiation by human RNA polymerase II.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Highly conserved core domain and unique N terminus with presumptive regulatory motifs in a human TATA factor (TFIID).

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

A downstream initiation element required for efficient TATA box binding and in vitro function of TFIID.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

How different eukaryotic transcriptional activators can cooperate promiscuously

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Genomic footprinting of the yeast HSP82 promoter reveals marked distortion of the DNA helix and constitutive occupancy of heat shock and TATA elements

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Family of proteins that interact with TFIID and regulate promoter activity

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Reduced binding of TFIID to transcriptionally compromised mutants of VP16.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Promoter specificity of basal transcription factors

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

The acidic activator GAL4-AH can stimulate polymerase II transcription by promoting assembly of a closed complex requiring TFIID and TFIIA

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Mitotic regulation of TFIID: inhibition of activator-dependent transcription and changes in subcellular localization

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Transcription activation in cells lacking TAFIIS.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

An HMG-like protein that can switch a transcriptional activator to a repressor.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

TATA-binding protein residues implicated in a functional interplay between negative cofactor NC2 (Dr1) and general factors TFIIA and TFIIB.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

A general mechanism for transcriptional synergy by eukaryotic activators

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

HMG17 is a chromatin-specific transcriptional coactivator that increases the efficiency of transcription initiation

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Interactions between RNA polymerase II, factors, and template leading to accurate transcription.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=33761

Mechanism of action of a yeast activator: Direct effect of GAL4 derivatives on mammalian TFIID-promoter interactions

23 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.94.17.8928

Direct and selective binding of an acidic transcriptional activation domain to the TATA-box factor TFIID

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.94.17.8928

Transcription-linked acetylation by Gcn5p of histones H3 and H4 at specific lysines

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.94.17.8928

Binding of transcription factor TFIID to the major late promoter during in vitro nucleosome assembly potentiates subsequent initiation by RNA polymerase II

21 January 2018

1 reference

12 December 2020

Pre-bending of a promoter sequence enhances affinity for the TATA-binding factor

1 reference

12 December 2020

Contact with a component of the polymerase II holoenzyme suffices for gene activation

1 reference

12 December 2020

Mechanism of action of an acidic transcriptional activator in vitro

1 reference

12 December 2020

1 reference

12 December 2020

Activation of Transcription by Recombinant Upstream Stimulatory Factor 1 Is Mediated by a Novel Positive Cofactor

1 reference

12 December 2020

A mechanism for TAFs in transcriptional activation: activation domain enhancement of TFIID-TFIIA--promoter DNA complex formation

1 reference

12 December 2020

Initiator sequences direct downstream promoter binding by human transcription factor IID

1 reference

12 December 2020

Crystal structure of the yeast TFIIA/TBP/DNA complex

1 reference

12 December 2020

Topology and reorganization of a human TFIID–promoter complex

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.94.17.8928

1 reference

11 August 2017

0 references

1 reference

11 August 2017

1 reference