Hierarchy and feedback in the evolution of the Escherichia coli transcription network (Q35720504)

9 August 2017

Hierarchy and feedback in the evolution of the Escherichia coli transcription network (English)

1 reference

9 August 2017

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M Cosentino Lagomarsino

1

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9 August 2017

P Jona

2

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9 August 2017

B Bassetti

3

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9 August 2017

H Isambert

4

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9 August 2017

language of work or name

English

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publication date

19 March 2007

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Proceedings of the National Academy of Sciences of the United States of America

9 August 2017

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9 August 2017

104

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9 August 2017

5516-5520

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9 August 2017

13

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Genomic analysis of the hierarchical structure of regulatory networks

9 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

Evolutionary potential of a duplicated repressor-operator pair: simulating pathways using mutation data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

The comprehensive updated regulatory network of Escherichia coli K-12.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

An evolutionary and functional assessment of regulatory network motifs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

Computing prokaryotic gene ubiquity: rescuing the core from extinction

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

Transcriptional regulatory code of a eukaryotic genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

Structure and evolution of transcriptional regulatory networks

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

12 July 2018

Consensus sequence Zen

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

Superfamilies of evolved and designed networks.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

Design of gene circuits: lessons from bacteria

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

Convergent evolution of gene circuits

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

Evolution of transcription factors and the gene regulatory network in Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

Negative autoregulation speeds the response times of transcription networks

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

Transcriptional regulatory networks in Saccharomyces cerevisiae

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

Network motifs in the transcriptional regulation network of Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

Engineering stability in gene networks by autoregulation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

Boolean formalization of genetic control circuits.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838485

Gene regulatory network growth by duplication.

12 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609023104

From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609023104

Adaptive evolution of bacterial metabolic networks by horizontal gene transfer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609023104

Logic backbone of a transcription network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609023104

Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609023104

Environmental selection of the feed-forward loop circuit in gene-regulation networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609023104

Statistical analysis of the spatial distribution of operons in the transcriptional regulation network of Escherichia coli

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17372223

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0609023104

1 reference

9 August 2017

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1 reference

1 reference

9 August 2017

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