Assessment of protein coding measures (Q35655634)

9 August 2017

title

Assessment of protein coding measures (English)

1 reference

9 August 2017

J W Fickett

1

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9 August 2017

C S Tung

series ordinal

2

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9 August 2017

publication date

1 December 1992

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9 August 2017

language of work or name

English

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published in

Nucleic Acids Research

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9 August 2017

volume

20

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9 August 2017

issue

24

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9 August 2017

page(s)

6441-6450

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publication type of scholarly work

9 August 2017

review article

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Recognition of protein coding regions in DNA sequences

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Codon preference and its use in identifying protein coding regions in long DNA sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justification

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Measurements of the effects that coding for a protein has on a DNA sequence and their use for finding genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

The relationship between base composition and codon usage in bacterial genes and its use for the simple and reliable identification of protein-coding sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Delineation of coding areas in DNA sequences through assignment of codon probabilities

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

A method to locate protein coding sequences in DNA of prokaryotic systems

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

New statistical approach to discriminate between protein coding and non-coding regions in DNA sequences and its evaluation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Heuristic informational analysis of sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Probability of coding of a DNA sequence: an algorithm to predict translated reading frames from their thermodynamic characteristics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Database bias and the identification of protein coding sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

12 July 2018

Periodicities in introns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Statistical characteristics of primary structures of the functional regions of the Escherichia coli genome. III. Computer recognition of coding regions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Statistical characteristics in primary structures of functional regions of Escherichia coli genome. II. Non-stationary Markov chains

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Statistical characteristics in primary structures of functional regions of Escherichia coli genome. I. Frequency characteristics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Computer methods for analyzing sequence recognition of nucleic acids

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Oligopeptide biases in protein sequences and their use in predicting protein coding regions in nucleotide sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Statistical method for predicting protein coding regions in nucleic acid sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Distribution and evolution of sequence characteristics in the E. coli genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

The frequency of oligonucleotides in mammalian genic regions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

DISTAN--a program which detects significant distances between short oligonucleotides

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Translation framing code and frame-monitoring mechanism as suggested by the analysis of mRNA and 16 S rRNA nucleotide sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Finding protein coding regions in genomic sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Construction of a facsimile data set for large genome sequence analysis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Electronic data publishing and GenBank

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Prediction of gene structure

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

12 July 2018

The EMBL Data Library

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

The complete DNA sequence of yeast chromosome III

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

Identifying coding exons by similarity search: alu-derived and other potentially misleading protein sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

The C. elegans genome sequencing project: a beginning

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334555

A prevalent persistent global nonrandomness that distinguishes coding and non-coding eucaryotic nuclear DNA sequences

12 July 2018

1 reference

12 December 2020

gm: a practical tool for automating DNA sequence analysis

1 reference

12 December 2020

A measure of DNA periodicity

1 reference

12 December 2020

The coding function of nucleotide sequences can be discerned by statistical analysis

1 reference

12 December 2020

Distance, size and shape

1 reference

12 December 2020

[15] k-tuple frequency analysis: From intron/exon discrimination to T-cell epitope mapping

1 reference

12 December 2020

Nucleotide distribution and the recognition of coding regions in DNA sequences: an information theory approach

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/20.24.6441

1 reference

9 August 2017

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9 August 2017

1 reference