RNA-Seq analysis reveals a six-gene SoxR regulon in Streptomyces coelicolor (Q35232930)

7 August 2017

RNA-Seq analysis reveals a six-gene SoxR regulon in Streptomyces coelicolor (English)

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7 August 2017

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Streptomyces coelicolor

object named as

Streptomyces coelicolor

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2

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7 August 2017

Nawar Naseer

1

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author name string

Monica Chander

series ordinal

3

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PubMed ID

25162599

7 August 2017

language of work or name

English

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publication date

27 August 2014

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7 August 2017

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7 August 2017

9

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7 August 2017

e106181

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7 August 2017

8

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Creative Commons Attribution 4.0 International

7 August 2017

start time

27 August 2014

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

DESeq2

object named as

DESeq

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Species-specific residues calibrate SoxR sensitivity to redox-active molecules.

13 July 2018

1 reference

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13 July 2018

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Novel roles of SoxR, a transcriptional regulator from Xanthomonas campestris, in sensing redox-cycling drugs and regulating a protective gene that have overall implications for bacterial stress physiology and virulence on a host plant

13 July 2018

1 reference

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Activation of the SoxR regulon in Streptomyces coelicolor by the extracellular form of the pigmented antibiotic actinorhodin

13 July 2018

1 reference

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Differential expression analysis for sequence count data

13 July 2018

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Expression of the Streptomyces coelicolor SoxR regulon is intimately linked with actinorhodin production

13 July 2018

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13 July 2018

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13 July 2018

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13 July 2018

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13 July 2018

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13 July 2018

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Agrobacterium tumefaciens soxR is involved in superoxide stress protection and also directly regulates superoxide-inducible expression of itself and a target gene

13 July 2018

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The phenazine pyocyanin is a terminal signalling factor in the quorum sensing network of Pseudomonas aeruginosa

13 July 2018

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13 July 2018

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Activation of SoxR-dependent transcription in Pseudomonas aeruginosa

13 July 2018

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The structure of ActVA-Orf6, a novel type of monooxygenase involved in actinorhodin biosynthesis.

13 July 2018

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Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)

13 July 2018

1 reference

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Subdivision of the helix-turn-helix GntR family of bacterial regulators in the FadR, HutC, MocR, and YtrA subfamilies

13 July 2018

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Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways in Streptomyces coelicolor using DNA microarrays

13 July 2018

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Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate

13 July 2018

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13 July 2018

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Cysteine-to-alanine replacements in the Escherichia coli SoxR protein and the role of the [2Fe-2S] centers in transcriptional activation.

13 July 2018

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afsR is a pleiotropic but conditionally required regulatory gene for antibiotic production in Streptomyces coelicolor A3(2).

13 July 2018

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13 July 2018

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Two divergently transcribed genes, soxR and soxS, control a superoxide response regulon of Escherichia coli

13 July 2018

1 reference

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Positive control of a global antioxidant defense regulon activated by superoxide-generating agents in Escherichia coli

13 July 2018

1 reference

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soxR, a locus governing a superoxide response regulon in Escherichia coli K-12

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4146615

Molecular characterization of the soxRS genes of Escherichia coli: two genes control a superoxide stress regulon

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4146615

Two-stage control of an oxidative stress regulon: the Escherichia coli SoxR protein triggers redox-inducible expression of the soxS regulatory gene

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4146615

Redox-active antibiotics control gene expression and community behavior in divergent bacteria.

13 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0106181

Pseudomonas aeruginosa SoxR does not conform to the archetypal paradigm for SoxR-dependent regulation of the bacterial oxidative stress adaptive response

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0106181

Regulation of superoxide stress in Pseudomonas putida KT2440 is different from the SoxR paradigm in Escherichia coli.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0106181

10.1371/JOURNAL.PONE.0106181

21 January 2018

Identifiers

DOI

1 reference

7 August 2017

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1 reference

7 August 2017

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PubMed ID

25162599