Divergent transcription is associated with promoters of transcriptional regulators (Q35074692)

6 August 2017

Divergent transcription is associated with promoters of transcriptional regulators (English)

1 reference

6 August 2017

0 references

Joaquin Zacarias Cabeza

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Marc Garibal

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Jean Imbert

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Jean-Christophe Andrau

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Salvatore Spicuglia

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

11

Romain Fenouil

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

13

Hélène Holota

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

6

Laurent Vanhille

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

14

Marta Gut

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

4

Aurélien Griffon

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

3

Aurélie Bergon

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Muhammad Ahmad Maqbool

10

object named as

Muhammad Ahmad Maqbool

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

18

Denis Puthier

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

author name string

Cyrille Lepoivre

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Mohamed Belhocine

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Miriam Yammine

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Frederic Koch

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Beatrice Loriod

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Ivo Gut

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

language of work or name

English

0 references

publication date

23 December 2013

1 reference

6 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

volume

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

page(s)

914

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1186/1471-2164-14-914

12 June 2020

exact match

0 references

cites work

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The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse

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CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters

8 July 2018

1 reference

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Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat.

8 July 2018

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8 July 2018

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Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription

8 July 2018

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8 July 2018

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Transcript dynamics of proinflammatory genes revealed by sequence analysis of subcellular RNA fractions

8 July 2018

1 reference

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A map of the cis-regulatory sequences in the mouse genome

8 July 2018

1 reference

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Long noncoding RNAs in C. elegans

8 July 2018

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Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts

8 July 2018

1 reference

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Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity

8 July 2018

1 reference

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Metazoan promoters: emerging characteristics and insights into transcriptional regulation

8 July 2018

1 reference

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R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters

8 July 2018

1 reference

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

8 July 2018

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Modular regulatory principles of large non-coding RNAs

8 July 2018

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TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks

8 July 2018

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Identification and characterization of a noncoding RNA at the mouse Pcna locus.

8 July 2018

1 reference

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Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution

8 July 2018

1 reference

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Genome instability and transcription elongation impairment in human cells depleted of THO/TREX

8 July 2018

1 reference

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Non-coding RNAs in human disease

8 July 2018

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Harnessing of the nucleosome-remodeling-deacetylase complex controls lymphocyte development and prevents leukemogenesis

8 July 2018

1 reference

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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

8 July 2018

1 reference

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Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling

8 July 2018

1 reference

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Genome-wide analyses of transcription factor GATA3-mediated gene regulation in distinct T cell types

8 July 2018

1 reference

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H3K4 tri-methylation provides an epigenetic signature of active enhancers

8 July 2018

1 reference

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Pervasive transcription - Lessons from yeast

8 July 2018

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The reality of pervasive transcription

8 July 2018

1 reference

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Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters.

8 July 2018

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8 July 2018

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Functional consequences of bidirectional promoters

8 July 2018

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PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters

8 July 2018

1 reference

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Antisense expression increases gene expression variability and locus interdependency

8 July 2018

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Charting histone modifications and the functional organization of mammalian genomes

8 July 2018

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Reciprocal intronic and exonic histone modification regions in humans.

8 July 2018

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Comprehensive comparative analysis of strand-specific RNA sequencing methods

8 July 2018

1 reference

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Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

8 July 2018

1 reference

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BEDTools: a flexible suite of utilities for comparing genomic features

8 July 2018

1 reference

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Immediate mediators of the inflammatory response are poised for gene activation through RNA polymerase II stalling.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Control of inducible gene expression by signal-dependent transcriptional elongation

8 July 2018

1 reference

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ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

8 July 2018

1 reference

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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

8 July 2018

1 reference

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Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

8 July 2018

1 reference

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

8 July 2018

1 reference

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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

8 July 2018

1 reference

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Divergent transcription from active promoters

8 July 2018

1 reference

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RNA exosome depletion reveals transcription upstream of active human promoters

8 July 2018

1 reference

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Diversity of core promoter elements comprising human bidirectional promoters

8 July 2018

1 reference

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Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

8 July 2018

1 reference

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Genome-wide RNA polymerase II: not genes only!

8 July 2018

1 reference

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Specific expression of long noncoding RNAs in the mouse brain

8 July 2018

1 reference

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Launching the T-cell-lineage developmental programme

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

A chromatin landmark and transcription initiation at most promoters in human cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

RNA maps reveal new RNA classes and a possible function for pervasive transcription

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Genome-wide transcription and the implications for genomic organization

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Hyperconserved CpG domains underlie Polycomb-binding sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Key factors in the organized chaos of early T cell development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Cotranscriptional processes and their influence on genome stability.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Genome-wide analysis of mammalian promoter architecture and evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

A bivalent chromatin structure marks key developmental genes in embryonic stem cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Filtering transcriptional noise during development: concepts and mechanisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Antisense transcription in the mammalian transcriptome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

A gene atlas of the mouse and human protein-encoding transcriptomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

An abundance of bidirectional promoters in the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

RAG-2-deficient mice lack mature lymphocytes owing to inability to initiate V(D)J rearrangement

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

First exon length controls active chromatin signatures and transcription

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Transcriptional features of genomic regulatory blocks

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3882496

Impairment of transcription elongation by R-loops in vitro

27 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24365181

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-14-914

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

12 June 2020

1023821911

0 references

Fatcat ID

release_e7ubfz3ahvdxzpvakvf4utyqbe

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/e7ubfz3ahvdxzpvakvf4utyqbe

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24365181%20AND%20SRC:MED&resulttype=core&format=json