A minimal set of tissue-specific hypomethylated CpGs constitute epigenetic signatures of developmental programming (Q34998497)

5 August 2017

A minimal set of tissue-specific hypomethylated CpGs constitute epigenetic signatures of developmental programming (English)

1 reference

5 August 2017

Elvira Isganaitis

7

0 references

Shyamal D Peddada

object named as

Shyamal D Peddada

6

0 references

author name string

Alejandro Colaneri

1

1 reference

5 August 2017

Tianyuan Wang

2

1 reference

5 August 2017

Vijayakanth Pagadala

3

1 reference

5 August 2017

Jaya Kittur

4

1 reference

5 August 2017

Nickolas G Staffa

5

1 reference

5 August 2017

Mary Elizabeth Patti

8

1 reference

5 August 2017

Lutz Birnbaumer

9

1 reference

5 August 2017

language of work or name

English

0 references

publication date

12 September 2013

1 reference

5 August 2017

1 reference

5 August 2017

8

1 reference

5 August 2017

e72670

1 reference

5 August 2017

9

1 reference

Creative Commons CC0 License

5 August 2017

start time

12 September 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

cites work

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Epigenetic programming and reprogramming during development

8 July 2018

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Human metastable epiallele candidates link to common disorders

8 July 2018

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DNA methylation profiling in the clinic: applications and challenges

8 July 2018

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Methylomic analysis identifies frequent DNA methylation of zinc finger protein 582 (ZNF582) in cervical neoplasms

8 July 2018

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A map of the cis-regulatory sequences in the mouse genome

8 July 2018

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Environmental epigenetics: prospects for studying epigenetic mediation of exposure-response relationships

8 July 2018

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Epigenetics and metabolism in 2011: Epigenetics, the life-course and metabolic disease

8 July 2018

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DNA methylation status predicts cell type-specific enhancer activity.

8 July 2018

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Cell type-specific DNA methylation at intragenic CpG islands in the immune system.

8 July 2018

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Expanded methyl-sensitive cut counting reveals hypomethylation as an epigenetic state that highlights functional sequences of the genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

CpG islands and the regulation of transcription

8 July 2018

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Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development.

8 July 2018

1 reference

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Relationship between gene body DNA methylation and intragenic H3K9me3 and H3K36me3 chromatin marks

8 July 2018

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The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes

8 July 2018

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Zinc finger protein 467 is a novel regulator of osteoblast and adipocyte commitment.

8 July 2018

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Epigenomics reveals a functional genome anatomy and a new approach to common disease

8 July 2018

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CpG island chromatin: a platform for gene regulation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

Orphan CpG islands identify numerous conserved promoters in the mammalian genome

8 July 2018

1 reference

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Comprehensive methylome map of lineage commitment from haematopoietic progenitors

8 July 2018

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Conserved role of intragenic DNA methylation in regulating alternative promoters

8 July 2018

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Optimized design and data analysis of tag-based cytosine methylation assays

8 July 2018

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Redefining CpG islands using hidden Markov models

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

DNA methylation markers in colorectal cancer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

Dynamic DNA methylation programs persistent adverse effects of early-life stress

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

Controlling false discoveries in multidimensional directional decisions, with applications to gene expression data on ordered categories

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

Individuality and epigenetics in obesity.

8 July 2018

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Developmental programming of CpG island methylation profiles in the human genome

8 July 2018

1 reference

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Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

8 July 2018

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MOM: maximum oligonucleotide mapping

8 July 2018

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GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

8 July 2018

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Differential chromatin marking of introns and expressed exons by H3K36me3.

8 July 2018

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The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

8 July 2018

1 reference

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

8 July 2018

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Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

8 July 2018

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Intergenerational transmission of glucose intolerance and obesity by in utero undernutrition in mice.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

Tissue specific differentially methylated regions (TDMR): Changes in DNA methylation during development.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

A novel CpG island set identifies tissue-specific methylation at developmental gene loci

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

A new class of tissue-specifically methylated regions involving entire CpG islands in the mouse.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

Localized H3K36 methylation states define histone H4K16 acetylation during transcriptional elongation in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG island promoters

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

CpG island mapping by epigenome prediction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

Environmental epigenomics and disease susceptibility

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

CpGcluster: a distance-based algorithm for CpG-island detection

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

Java Treeview--extensible visualization of microarray data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

Open source clustering software

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

Comprehensive analysis of CpG islands in human chromosomes 21 and 22

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

Gene ontology: tool for the unification of biology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

CpG islands in vertebrate genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

CpG-rich islands and the function of DNA methylation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

Chromatin organization marks exon-intron structure

8 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0072670

DNA-binding factors shape the mouse methylome at distal regulatory regions

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771925

Reductions in caloric intake and early postnatal growth prevent glucose intolerance and obesity associated with low birthweight

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24069155

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Cell type-specific methylation profiles occurring disproportionately in CpG-less regions that delineate developmental similarity

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24069155

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0072670

1 reference

5 August 2017

0 references

1 reference

5 August 2017

1 reference