DNA-histone interactions are sufficient to position a single nucleosome juxtaposing Drosophila Adh adult enhancer and distal promoter (Q34973087)

5 August 2017

title

DNA-histone interactions are sufficient to position a single nucleosome juxtaposing Drosophila Adh adult enhancer and distal promoter (English)

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5 August 2017

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J R Jackson

1

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5 August 2017

C Benyajati

series ordinal

2

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5 August 2017

publication date

1 February 1993

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5 August 2017

language of work or name

English

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published in

Nucleic Acids Research

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5 August 2017

volume

21

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5 August 2017

issue

4

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5 August 2017

page(s)

957-967

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Internal structure of the chromatin subunit

5 August 2017

cites work

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57 Sequencing end-labeled DNA with base-specific chemical cleavages

8 July 2018

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A 145-base pair DNA sequence that positions itself precisely and asymmetrically on the nucleosome core

8 July 2018

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Structural analysis of a triple complex between the histone octamer, a Xenopus gene for 5S RNA and transcription factor IIIA.

8 July 2018

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DNA bending and its relation to nucleosome positioning

8 July 2018

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Sequence periodicities in chicken nucleosome core DNA.

8 July 2018

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The triosephosphate isomerase gene from maize: introns antedate the plant-animal divergence

8 July 2018

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Sequence-specific positioning of core histones on an 860 base-pair DNA. Experiment and theory

8 July 2018

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Principles of sequence-dependent flexure of DNA.

8 July 2018

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Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.

8 July 2018

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Regulation of inducible and tissue-specific gene expression

8 July 2018

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8 July 2018

DNA in the nucleosome

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Characterization of Drosophila transcription factors that activate the tandem promoters of the alcohol dehydrogenase gene

8 July 2018

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Developmental switch in chromatin structure associated with alternate promoter usage in the Drosophila melanogaster alcohol dehydrogenase gene

8 July 2018

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Roles of cis-acting elements and chromatin structure in Drosophila alcohol dehydrogenase gene expression

8 July 2018

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Nuclease hypersensitive sites in chromatin

8 July 2018

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Depletion of histone H4 and nucleosomes activates the PHO5 gene in Saccharomyces cerevisiae.

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Identification of DNA sequences required for the regulation of Drosophila alcohol dehydrogenase gene expression

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Protein/DNA architecture of the DNase I hypersensitive region of the Drosophila hsp26 promoter

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Sequence-specific positioning of nucleosomes over the steroid-inducible MMTV promoter

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

In vivo footprinting of a muscle specific enhancer by ligation mediated PCR.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Artificial nucleosome positioning sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

The role of specific enhancer-promoter interactions in the Drosophila Adh promoter switch

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Temporal and spatial utilization of the alcohol dehydrogenase gene promoters during the development of Drosophila melanogaster

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Role of transcriptional interference in the Drosophila melanogaster Adh promoter switch

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

DNA and protein determinants of nucleosome positioning on sea urchin 5S rRNA gene sequences in vitro

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

8 July 2018

Intrinsically bent DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

The structure of DNA in a nucleosome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Nucleosome positioning modulates accessibility of regulatory proteins to the mouse mammary tumor virus promoter

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Identification of cis-regulatory elements required for larval expression of the Drosophila melanogaster alcohol dehydrogenase gene

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

The Adh gene promoters of Drosophila melanogaster and Drosophila orena are functionally conserved and share features of sequence structure and nuclease-protected sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Nucleosome positioning: occurrence, mechanisms, and functional consequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Nucleosomes are positioned with base pair precision adjacent to the alpha 2 operator in Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

The binding site of a steroid hormone receptor-like protein within the Drosophila Adh adult enhancer is required for high levels of tissue-specific alcohol dehydrogenase expression

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Chromatin as an essential part of the transcriptional mechanim

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Conserved enhancer and silencer elements responsible for differential Adh transcription in Drosophila cell lines

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Chromatin assembly on plasmid DNA in vitro. Apparent spreading of nucleosome alignment from one region of pBR327 by histone H5.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Histone contributions to the structure of DNA in the nucleosome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

A conserved regulatory unit implicated in tissue-specific gene expression in Drosophila and man

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Stable nucleosome positioning and complete repression by the yeast alpha 2 repressor are disrupted by amino-terminal mutations in histone H4.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

In vivo stage- and tissue-specific DNA-protein interactions at the D. melanogaster alcohol dehydrogenase distal promoter and adult enhancer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Characterization and purification of Adh distal promoter factor 2, Adf-2, a cell-specific and promoter-specific repressor in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

The transcriptionally-active MMTV promoter is depleted of histone H1

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

The messenger RNA for alcohol dehydrogenase in Drosophila melanogaster differs in its 5' end in different developmental stages

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=309230

Reconstitution of chromatin from purified components

26 October 2018

1 reference

12 December 2020

Structure of the nucleosome core particle at 7 Å resolution

1 reference

12 December 2020

Structure of DNase I at 2.0 Å resolution suggests a mechanism for binding to and cutting DNA

1 reference

12 December 2020

A decapeptide motif for binding to the minor groove of DNA. A proposal

1 reference

12 December 2020

Analysis of nucleosome positioning by in vitro reconstitution

1 reference

12 December 2020

Can one measure the free energy of binding of the histone octamer to different DNA sequences by salt-dependent reconstitution?

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/21.4.957

1 reference

5 August 2017

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5 August 2017

1 reference