Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets (Q34883692)

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English	Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets	scientific article

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scholarly article

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Europe PubMed Central

5 August 2017

Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets (English)

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Europe PubMed Central

5 August 2017

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based on heuristic

inferred from title

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based on heuristic

inferred from title

W. Richard McCombie

5

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Europe PubMed Central

5 August 2017

author name string

Xiao Xu

1

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Europe PubMed Central

5 August 2017

Yuanhao Zhang

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Europe PubMed Central

5 August 2017

Jennie Williams

3

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Europe PubMed Central

5 August 2017

Eric Antoniou

4

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Europe PubMed Central

5 August 2017

Song Wu

6

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Europe PubMed Central

5 August 2017

Wei Zhu

7

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Europe PubMed Central

5 August 2017

Nicholas O Davidson

8

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Europe PubMed Central

5 August 2017

Paula Denoya

9

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Europe PubMed Central

5 August 2017

Ellen Li

10

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Europe PubMed Central

5 August 2017

publication date

28 June 2013

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Europe PubMed Central

5 August 2017

BMC Bioinformatics

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Europe PubMed Central

5 August 2017

14 Suppl 9

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5 August 2017

S1

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5 August 2017

describes a project that uses

object named as

DESeq

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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affy package

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

https://scigraph.springernature.com/pub.10.1186/1471-2105-14-s9-s1

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Host genes related to paneth cells and xenobiotic metabolism are associated with shifts in human ileum-associated microbial composition

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8 July 2018

RNA-seq analysis of prostate cancer in the Chinese population identifies recurrent gene fusions, cancer-associated long noncoding RNAs and aberrant alternative splicings

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A comparison of statistical methods for detecting differentially expressed genes from RNA-seq data

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8 July 2018

Transcriptome analyses to investigate the pathogenesis of RNA splicing factor retinitis pigmentosa.

1 reference

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Finding consistent patterns: a nonparametric approach for identifying differential expression in RNA-Seq data

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Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma

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Transcriptional profiling of endocrine cerebro-osteodysplasia using microarray and next-generation sequencing

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Integrated genome-wide analysis of transcription factor occupancy, RNA polymerase II binding and steady-state RNA levels identify differentially regulated functional gene classes

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8 July 2018

Differential expression in RNA-seq: a matter of depth

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8 July 2018

Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays

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8 July 2018

From RNA-seq reads to differential expression results

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3697991

8 July 2018

Differential expression analysis for sequence count data

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3697991

8 July 2018

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1 reference

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8 July 2018

Should we abandon the t-test in the analysis of gene expression microarray data: a comparison of variance modeling strategies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3697991

8 July 2018

Transcriptome profiling in neurodegenerative disease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3697991

8 July 2018

baySeq: empirical Bayesian methods for identifying differential expression in sequence count data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3697991

8 July 2018

A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3697991

8 July 2018

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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8 July 2018

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

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8 July 2018

Estimating accuracy of RNA-Seq and microarrays with proteomics

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8 July 2018

TopHat: discovering splice junctions with RNA-Seq

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8 July 2018

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

1 reference

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8 July 2018

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3697991

8 July 2018

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

1 reference

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8 July 2018

SPARC promoter hypermethylation in colorectal cancers can be reversed by 5-Aza-2'deoxycytidine to increase SPARC expression and improve therapy response

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Moderated statistical tests for assessing differences in tag abundance

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21 January 2018

Identifiers

10.1186/1471-2105-14-S9-S1

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Europe PubMed Central

5 August 2017

DBLP publication ID

journals/bmcbi/XuZWAMWZDDL13

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

1 reference

Europe PubMed Central

5 August 2017

1 reference

Europe PubMed Central

5 August 2017

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