Evaluation of function predictions by PFP, ESG, and PSI-BLAST for moonlighting proteins (Q34485962)

2 August 2017

title

Evaluation of function predictions by PFP, ESG,and PSI-BLAST for moonlighting proteins (English)

1 reference

2 August 2017

Evaluation of function predictions by PFP, ESG, and PSI-BLAST for moonlighting proteins (English)

1 reference

10.1186/1753-6561-6-S7-S5

Crossref

DOI

https://api.crossref.org/works/10.1186/1753-6561-6-S7-S5

protein function prediction

17 January 2025

main subject

0 references

4

Daisuke Kihara

1 reference

2 August 2017

Ishita Khan

1

1 reference

2 August 2017

Meghana Chitale

series ordinal

2

1 reference

2 August 2017

Catherine Rayon

series ordinal

3

1 reference

2 August 2017

publication date

13 November 2012

1 reference

2 August 2017

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=23173871

full work available at URL

17 January 2025

https://bmcproc.biomedcentral.com/track/pdf/10.1186/1753-6561-6-S7-S5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A23173871

https://europepmc.org/articles/PMC3504920

17 January 2025

file format

HyperText Markup Language

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A23173871

https://europepmc.org/articles/PMC3504920?pdf=render

17 January 2025

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A23173871

https://link.springer.com/content/pdf/10.1186/1753-6561-6-S7-S5.pdf

17 January 2025

1 reference

10.1186/1753-6561-6-S7-S5

https://api.crossref.org/works/10.1186/1753-6561-6-S7-S5

17 January 2025

1 reference

2 August 2017

volume

6 Suppl 7

1 reference

2 August 2017

page(s)

S5

1 reference

Structure- and sequence-based function prediction for non-homologous proteins

2 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Proteins with neomorphic moonlighting functions in disease.

6 July 2018

1 reference

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Binding ligand prediction for proteins using partial matching of local surface patches

6 July 2018

1 reference

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Real-time ligand binding pocket database search using local surface descriptors

6 July 2018

1 reference

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Moonlighting proteins: an intriguing mode of multitasking

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

ESG: extended similarity group method for automated protein function prediction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

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6 July 2018

1 reference

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PFP: Automated prediction of gene ontology functional annotations with confidence scores using protein sequence data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Structure-based function prediction: approaches and applications.

6 July 2018

1 reference

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Moonlighting proteins in yeasts

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

ConFunc--functional annotation in the twilight zone

6 July 2018

1 reference

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The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.

6 July 2018

1 reference

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Function prediction of uncharacterized proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Probabilistic protein function prediction from heterogeneous genome-wide data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Widely predicting specific protein functions based on protein-protein interaction data and gene expression profile

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Network-based prediction of protein function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

FlowerPower: clustering proteins into domain architecture classes for phylogenomic inference of protein function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Enhanced automated function prediction using distantly related sequences and contextual association by PFP.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Pfam: clans, web tools and services

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Protein molecular function prediction by Bayesian phylogenomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Ontological analysis of gene expression data: current tools, limitations, and open problems

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Assigning new GO annotations to protein data bank sequences by combining structure and sequence homology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Inference of protein function from protein structure.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

The ProDom database of protein domain families: more emphasis on 3D

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Mapping Gene Ontology to proteins based on protein-protein interaction data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

GoFigure: automated Gene Ontology annotation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Moonlighting proteins: old proteins learning new tricks.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Predicting protein function from protein/protein interaction data: a probabilistic approach

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Predicting gene function by conserved co-expression

6 July 2018

1 reference

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Automated ortholog inference from phylogenetic trees and calculation of orthology reliability

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

From structure to function: approaches and limitations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

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6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

6 July 2018

Moonlighting proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Cluster analysis and display of genome-wide expression patterns

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Basic local alignment search tool

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

Rapid and sensitive sequence comparison with FASTP and FASTA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504920

New paradigm in protein function prediction for large scale omics analysis

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1753-6561-6-S7-S5

Protein folds and functions

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1753-6561-6-S7-S5

Moonlighting proteins in neurological disorders

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23173871

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

https://pubmed.ncbi.nlm.nih.gov/23173871

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1753-6561-6-S7-S5

1 reference

Dimensions Publication ID

2 August 2017

1045792683

0 references

Fatcat ID

release_o7ifoxw5d5eftac4vl4wgz5jny

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/o7ifoxw5d5eftac4vl4wgz5jny

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3504920

1 reference

2 August 2017

1 reference