The RNA-binding protein repertoire of embryonic stem cells. (Q34361566)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

title

The RNA-binding protein repertoire of embryonic stem cells (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

1 reference

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

S. Chul Kwon

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Bernd Fischer

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Alfredo Castelló

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Jeroen Krijgsveld

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

10

V Narry Kim

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

author name string

Hyerim Yi

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Katrin Eichelbaum

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Sophia Föhr

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Kwon Tae You

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

publication date

4 August 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

Nature Structural & Molecular Biology

6 March 2020

language of work or name

English

0 references

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

volume

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

issue

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

page(s)

1122-1130

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

Embryo-Derived Stem Cells: Of Mice and Men

6 March 2020

cites work

1 reference

Naive and primed pluripotent states

31 March 2020

1 reference

The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

31 March 2020

1 reference

Chromatin connections to pluripotency and cellular reprogramming

31 March 2020

1 reference

An extended transcriptional network for pluripotency of embryonic stem cells

31 March 2020

1 reference

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

31 March 2020

1 reference

Control of the Embryonic Stem Cell State

31 March 2020

1 reference

Highly coordinated proteome dynamics during reprogramming of somatic cells to pluripotency

31 March 2020

1 reference

A molecular roadmap of reprogramming somatic cells into iPS cells

31 March 2020

1 reference

A hierarchical network controls protein translation during murine embryonic stem cell self-renewal and differentiation

31 March 2020

1 reference

Systems-level dynamic analyses of fate change in murine embryonic stem cells

31 March 2020

1 reference

Molecular mechanisms of translational control

31 March 2020

1 reference

Trading translation with RNA-binding proteins

31 March 2020

1 reference

RNA-binding proteins and post-transcriptional gene regulation

31 March 2020

1 reference

Deciphering the role of RNA-binding proteins in the post-transcriptional control of gene expression

31 March 2020

1 reference

Proteome-Wide Search Reveals Unexpected RNA-Binding Proteins in Saccharomyces cerevisiae

31 March 2020

1 reference

A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes

31 March 2020

1 reference

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins

31 March 2020

1 reference

The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts

31 March 2020

1 reference

Isolation of the heterogeneous nuclear RNA-ribonucleoprotein complex (hnRNP): a unique supramolecular assembly

31 March 2020

1 reference

Global analysis of yeast mRNPs

31 March 2020

1 reference

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

31 March 2020

1 reference

Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions

31 March 2020

1 reference

Gemin5-snRNA interaction reveals an RNA binding function for WD repeat domains

31 March 2020

1 reference

Intrinsic disorder and functional proteomics

31 March 2020

1 reference

The role of structural disorder in the function of RNA and protein chaperones

31 March 2020

1 reference

Intrinsically unstructured proteins and their functions

31 March 2020

1 reference

Cell-free formation of RNA granules: bound RNAs identify features and components of cellular assemblies.

31 March 2020

1 reference

Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels

31 March 2020

1 reference

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

31 March 2020

1 reference

CLIP identifies Nova-regulated RNA networks in the brain

31 March 2020

1 reference

LIN28A is a suppressor of ER-associated translation in embryonic stem cells

31 March 2020

1 reference

Module map of stem cell genes guides creation of epithelial cancer stem cells

31 March 2020

1 reference

An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors

31 March 2020

1 reference

Gene expression in human embryonic stem cell lines: unique molecular signature

31 March 2020

1 reference

Dissecting self-renewal in stem cells with RNA interference

31 March 2020

1 reference

Control of embryonic stem cell lineage commitment by core promoter factor, TAF3.

31 March 2020

1 reference

L1TD1 Is a Marker for Undifferentiated Human Embryonic Stem Cells

31 March 2020

1 reference

RNA-binding protein L1TD1 interacts with LIN28 via RNA and is required for human embryonic stem cell self-renewal and cancer cell proliferation

31 March 2020

1 reference

ECAT11/L1td1 is enriched in ESCs and rapidly activated during iPSC generation, but it is dispensable for the maintenance and induction of pluripotency

31 March 2020

1 reference

A Myc network accounts for similarities between embryonic stem and cancer cell transcription programs

31 March 2020

1 reference

Trim71 cooperates with microRNAs to repress Cdkn1a expression and promote embryonic stem cell proliferation

31 March 2020

1 reference

TRIM-NHL proteins take on miRNA regulation

31 March 2020

1 reference

The mammalian TRIM-NHL protein TRIM71/LIN-41 is a repressor of mRNA function

31 March 2020

1 reference

31 March 2020

TRIM proteins and cancer

1 reference

Characterization and potential function of a novel pre-implantation embryo-specific RING finger protein: TRIML1

31 March 2020

1 reference

A genome-scale RNAi screen for Oct4 modulators defines a role of the Paf1 complex for embryonic stem cell identity

31 March 2020

1 reference

A genome-wide RNAi screen identifies a new transcriptional module required for self-renewal

31 March 2020

1 reference

A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.

31 March 2020

1 reference

The Trypanosoma brucei zinc finger protein ZC3H18 is involved in differentiation

31 March 2020

1 reference

Sequential gain of mutations in severe congenital neutropenia progressing to acute myeloid leukemia

31 March 2020

1 reference

Genome-wide siRNA screen for mediators of NF-κB activation

31 March 2020

1 reference

The CCR4-NOT complex plays diverse roles in mRNA metabolism

31 March 2020

1 reference

Cnot1, Cnot2, and Cnot3 maintain mouse and human ESC identity and inhibit extraembryonic differentiation

31 March 2020

1 reference

The role of human MBF1 as a transcriptional coactivator

31 March 2020

1 reference

Multiprotein bridging factor 1 (MBF1) is an evolutionarily conserved transcriptional coactivator that connects a regulatory factor and TATA element-binding protein

31 March 2020

1 reference

Yeast Coactivator MBF1 Mediates GCN4-Dependent Transcriptional Activation

31 March 2020

1 reference

Multiprotein bridging factor-1 (MBF-1) is a cofactor for nuclear receptors that regulate lipid metabolism

31 March 2020

1 reference

EDF-1, a novel gene product down-regulated in human endothelial cell differentiation

31 March 2020

1 reference

Triggering neural differentiation of ES cells by subtype switching of importin-alpha

31 March 2020

1 reference

TRIM family proteins: retroviral restriction and antiviral defence

31 March 2020

1 reference

Efp targets 14-3-3 sigma for proteolysis and promotes breast tumour growth

31 March 2020

1 reference

TRIM25 RING-finger E3 ubiquitin ligase is essential for RIG-I-mediated antiviral activity

31 March 2020

1 reference

Estrogen-responsive finger protein as a new potential biomarker for breast cancer

31 March 2020

1 reference

Expression of estrogen-responsive finger protein (Efp) is associated with advanced disease in human epithelial ovarian cancer

31 March 2020

1 reference

Increasing 14-3-3 sigma expression with declining estrogen receptor alpha and estrogen-responsive finger protein expression defines malignant progression of endometrial carcinoma

31 March 2020

1 reference

The let-7 target gene mouse lin-41 is a stem cell specific E3 ubiquitin ligase for the miRNA pathway protein Ago2

31 March 2020

1 reference

The ubiquitin ligase mLin41 temporally promotes neural progenitor cell maintenance through FGF signaling

31 March 2020

1 reference

The let-7 microRNA target gene, Mlin41/Trim71 is required for mouse embryonic survival and neural tube closure

31 March 2020

1 reference

The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor

31 March 2020

1 reference

Cloning and regulation of the vertebrate homologue of lin-41 that functions as a heterochronic gene in Caenorhabditis elegans

31 March 2020

1 reference

Human TRIM71 and its nematode homologue are targets of let-7 microRNA and its zebrafish orthologue is essential for development

31 March 2020

1 reference

RNA-binding E3 ubiquitin ligases: novel players in nucleic acid regulation

31 March 2020

1 reference

A RING-type ubiquitin ligase family member required to repress follicular helper T cells and autoimmunity

31 March 2020

1 reference

Roquin represses autoimmunity by limiting inducible T-cell co-stimulator messenger RNA

31 March 2020

1 reference

Roquin binds inducible costimulator mRNA and effectors of mRNA decay to induce microRNA-independent post-transcriptional repression

31 March 2020

1 reference

System-wide identification of RNA-binding proteins by interactome capture.

31 March 2020

1 reference

Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics

31 March 2020

1 reference

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

31 March 2020

1 reference

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

31 March 2020

1 reference

Andromeda: a peptide search engine integrated into the MaxQuant environment

31 March 2020

1 reference

Infrastructure for the life sciences: design and implementation of the UniProt website

31 March 2020

1 reference

Bioconductor: open software development for computational biology and bioinformatics

31 March 2020

1 reference

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

31 March 2020

1 reference

RNA-binding proteins: modular design for efficient function

31 March 2020

1 reference

IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content

31 March 2020

1 reference

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

31 March 2020

1 reference

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NSMB.2638

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23912277%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

1 reference