Diffraction data analysis in the presence of radiation damage (Q30436463)

16 September 2017

Diffraction data analysis in the presence of radiation damage (English)

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16 September 2017

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5

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Marcin Cymborowski

2

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Wladek Minor

4

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Dominika Borek

object named as

Dominika Borek

1

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Mischa Machius

3

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Mischa Machius

1 reference

16 September 2017

24 March 2010

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Acta Crystallographica Section D: Biological Crystallography

16 September 2017

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16 September 2017

66

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16 September 2017

426-436

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16 September 2017

Pt 4

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Structure determination of the cancer-associated Mycoplasma hyorhinis protein Mh-p37

16 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Structural and Biochemical Basis for Polyamine Binding to the Tp0655 Lipoprotein of Treponema pallidum: Putative Role for Tp0655 (TpPotD) as a Polyamine Receptor

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Radiation damage to protein specimens from electron beam imaging and diffraction: a mini-review of anti-damage approaches, with special reference to synchrotron X-ray crystallography

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

XANES measurements of the rate of radiation damage to selenomethionine side chains

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

TEMPERATURE EFFECTS ON FREE RADICAL FORMATION AND ELECTRON MIGRATION IN IRRADIATED PROTEINS.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Experimental determination of the radiation dose limit for cryocooled protein crystals

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

A quantitative approach to data-collection strategies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

X-ray damage to the Mn4Ca complex in single crystals of photosystem II: a case study for metalloprotein crystallography

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Parameters affecting the X-ray dose absorbed by macromolecular crystals.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Choice of data-collection parameters based on statistic modelling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Zero-dose extrapolation as part of macromolecular synchrotron data reduction.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Multiparametric scaling of diffraction intensities

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Specific radiation damage can be used to solve macromolecular crystal structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Investigation of possible free-radical scavengers and metrics for radiation damage in protein cryocrystallography

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Physical and chemical considerations of damage induced in protein crystals by synchrotron radiation: a radiation chemical perspective.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Specific protein dynamics near the solvent glass transition assayed by radiation-induced structural changes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Ultrahigh-resolution structure of a BPTI mutant

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Structural changes in a cryo-cooled protein crystal owing to radiation damage

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Specific chemical and structural damage to proteins produced by synchrotron radiation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Can anomalous signal of sulfur become a tool for solving protein crystal structures?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Cryo-electron energy loss spectroscopy: observations on vitrified hydrated specimens and radiation damage

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Absorbed dose calculations for macromolecular crystals: improvements to RADDOSE.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Differential specific radiation damage in the Cu II-bound and Pd II-bound forms of an alpha-helical foldamer: a case study of crystallographic phasing by RIP and SAD.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

The many faces of radiation-induced changes

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Radiation-induced site-specific damage of mercury derivatives: phasing and implications

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Electron tunneling through organic molecules in frozen glasses

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Radiation-damage-induced phasing with anomalous scattering: substructure solution and phasing

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Structural effects of radiation damage and its potential for phasing

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Phasing in the presence of severe site-specific radiation damage through dose-dependent modelling of heavy atoms.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Measurement errors and their consequences in protein crystallography

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2852307

Optics systems for the home laboratory: caveat emptor

26 November 2018

1 reference

12 December 2020

The 'fingerprint' that X-rays can leave on structures

1 reference

12 December 2020

On integrating direct methods and isomorphous-replacement techniques: triplet estimation and treatment of errors

1 reference

12 December 2020

X-ray-induced debromination of nucleic acids at the Br K absorption edge and implications for MAD phasing

1 reference

12 December 2020

Unit-cell volume change as a metric of radiation damage in crystals of macromolecules

1 reference

12 December 2020

Quantifying X-ray radiation damage in protein crystals at cryogenic temperatures

1 reference

12 December 2020

Modelling and refining site-specific radiation damage in SAD/MAD phasing

1 reference

12 December 2020

Processing of X-ray diffraction data collected in oscillation mode

1 reference

12 December 2020

10.1107/S0907444909040177

Identifiers

DOI

1 reference

16 September 2017

1 reference

16 September 2017

1 reference

PMCID

2852307