Structurally homologous all beta-barrel proteins adopt different mechanisms of folding (Q30164654)

18 September 2017

Structurally homologous all beta-barrel proteins adopt different mechanisms of folding (English)

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18 September 2017

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Thiagarajan Srimathi

1

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18 September 2017

Thallampuranam Krishnaswamy S Kumar

2

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18 September 2017

Karuppanan Muthusamy Kathir

3

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18 September 2017

Ya-Hui Chi

4

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18 September 2017

Sampath Srisailam

5

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18 September 2017

Wann-Yin Lin

6

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18 September 2017

Ing-Ming Chiu

7

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18 September 2017

Chin Yu

8

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18 September 2017

language of work or name

English

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publication date

1 July 2003

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18 September 2017

14

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based on heuristic

inferred from page(s)

published in

Biophysical Journal

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18 September 2017

85

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18 September 2017

459-472

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18 September 2017

1

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Oligomerization of acidic fibroblast growth factor is not a prerequisite for its cell proliferation activity.

18 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Protein folding and unfolding at atomic resolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Amyloid-like fibril formation in an all beta-barrel protein involves the formation of partially structured intermediate(s).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Refolding kinetics of cytochrome c(551) reveals a mechanistic difference between urea and guanidine

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Keeping it in the family: folding studies of related proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Structural events during the refolding of an all beta-sheet protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Identification and characterization of an equilibrium intermediate in the unfolding pathway of an all beta-barrel protein.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Understanding protein folding via free-energy surfaces from theory and experiment

3 June 2018

1 reference

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Apoflavodoxin (un)folding followed at the residue level by NMR.

3 June 2018

1 reference

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Structural energetics of protein folding and binding.

3 June 2018

1 reference

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The cooperativity of burst phase reactions explored

3 June 2018

1 reference

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Solution structure of human acidic fibroblast growth factor and interaction with heparin-derived hexasaccharide

3 June 2018

1 reference

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Obligatory steps in protein folding and the conformational diversity of the transition state

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

From Levinthal to pathways to funnels

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Role of non-native aromatic and hydrophobic interactions in the folding of hen egg white lysozyme.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

X-ray crystal structure of human acidic fibroblast growth factor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

1H, 13C and 15N chemical shift referencing in biomolecular NMR

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Pathways of protein folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Structure based prediction of protein folding intermediates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Three-state thermodynamic analysis of the denaturation of staphylococcal nuclease mutants

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Single versus parallel pathways of protein folding and fractional formation of structure in the transition state

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Staphylococcal nuclease: a showcase of m-value effects

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Toward an outline of the topography of a realistic protein-folding funnel

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

The nature of protein folding pathways: the classical versus the new view

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Kinetic traps in lysozyme folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Molecular sieve studies of interacting protein systems. I. Equations for transport of associating systems.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

The molten globule state as a clue for understanding the folding and cooperativity of globular-protein structure.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Folding of a predominantly beta-structure protein: rat intestinal fatty acid binding protein.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Dominant forces in protein folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Study of the "molten globule" intermediate state in protein folding by a hydrophobic fluorescent probe

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Conformational stability and activity of ribonuclease T1 and mutants. Gln25----Lys, Glu58----Ala, and the double mutant.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Influence of backbone conformation on protein aggregation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Thermodynamic characterization of the human acidic fibroblast growth factor: evidence for cold denaturation

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

15N NMR Relaxation Studies of Free and Ligand-bound Human Acidic Fibroblast Growth Factor

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Use of fast protein size-exclusion liquid chromatography to study the unfolding of proteins which denature through the molten globule.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Guanidinium chloride induction of partial unfolding in amide proton exchange in RNase A.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303102

Protein stability as a function of denaturant concentration: the thermal stability of barnase in the presence of urea.

26 November 2018

1 reference

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Letter to the editor: 1H, 13C and 15N chemical shift assignments of the acidic fibroblast growth factor from Notopthalmus viridescens

26 November 2018

1 reference

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Protein stability parameters measured by hydrogen exchange

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974491-9

Monitoring the sizes of denatured ensembles of staphylococcal nuclease proteins: implications regarding m values, intermediates, and thermodynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974491-9

Observation of multistate kinetics during the slow folding and unfolding of barstar

7 January 2021

1 reference

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Energetics of denaturation and m values of staphylococcal nuclease mutants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974491-9

Beta-sheet proteins with nearly identical structures have different folding intermediates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974491-9

The phase transition between a compact denatured state and a random coil state in staphylococcal nuclease is first-order

7 January 2021

1 reference

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Protein stability: urea-induced versus guanidine-induced unfolding of metmyoglobin

7 January 2021

1 reference

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The Refolding of Human Lysozyme: A Comparison with the Structurally Homologous Hen Lysozyme

7 January 2021

1 reference

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Protein internal flexibility and global stability: effect of urea on hydrogen exchange rates of bovine pancreatic trypsin inhibitor

7 January 2021

1 reference

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Three-Dimensional Structure of Acidic Fibroblast Growth Factor in Solution: Effects of Binding to a Heparin Functional Analog

7 January 2021

1 reference

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Protein folding and protein evolution: common folding nucleus in different subfamilies of c-type cytochromes?

7 January 2021

1 reference

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A partly Folded State of Acidic Fibroblast Growth Factor at Low Ph

7 January 2021

1 reference

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Effect of preformed correct tertiary interactions on rapid two-state tendamistat folding: evidence for hairpins as initiation sites for beta-sheet formation

7 January 2021

1 reference

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Conserved residues and the mechanism of protein folding

7 January 2021

1 reference

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Mutant forms of staphylococcal nuclease with altered patterns of guanidine hydrochloride and urea denaturation

7 January 2021

1 reference

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Effect of polyanions on the refolding of human acidic fibroblast growth factor

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12829501

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/S0006-3495(03)74491-9

1 reference

18 September 2017

1 reference

18 September 2017

1 reference