Advances in understanding cancer genomes through second-generation sequencing (Q30014827)

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20847746

22 May 2017

2

Gabriel S

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20847746

22 May 2017

1

Matthew Meyerson

1 reference

Europe PubMed Central

PubMed publication ID

20847746

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20847746

14 July 2024

author name string

Gad Getz

series ordinal

3

1 reference

Europe PubMed Central

PubMed publication ID

20847746

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20847746

14 July 2024

publication date

October 2010

1 reference

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20847746

22 May 2017

language of work or name

1 reference

https://www.nature.com/articles/nrg2841.pdf

22 May 2017

work available at URL

1 reference

https://api.crossref.org/works/10.1038/NRG2841

https://www.nature.com/articles/nrg2841

14 July 2024

1 reference

https://api.crossref.org/works/10.1038/NRG2841

14 July 2024

published in

Nature Reviews Genetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20847746

22 May 2017

volume

11

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20847746

22 May 2017

issue

10

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20847746

22 May 2017

page(s)

685-96

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20847746

Accurate whole human genome sequencing using reversible terminator chemistry

22 May 2017

cites work

1 reference

Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays

31 March 2020

1 reference

Genome sequencing in microfabricated high-density picolitre reactors

31 March 2020

1 reference

Accurate multiplex polony sequencing of an evolved bacterial genome

31 March 2020

1 reference

The complete genome of an individual by massively parallel DNA sequencing

31 March 2020

1 reference

Transcriptome sequencing to detect gene fusions in cancer

31 March 2020

1 reference

Chimeric transcript discovery by paired-end transcriptome sequencing

31 March 2020

1 reference

Exome sequencing identifies the cause of a mendelian disorder

31 March 2020

1 reference

Targeted capture and massively parallel sequencing of 12 human exomes

31 March 2020

1 reference

DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome

31 March 2020

1 reference

Recurring mutations found by sequencing an acute myeloid leukemia genome

31 March 2020

1 reference

A comprehensive catalogue of somatic mutations from a human cancer genome

31 March 2020

1 reference

A small-cell lung cancer genome with complex signatures of tobacco exposure

31 March 2020

1 reference

The mutation spectrum revealed by paired genome sequences from a lung cancer patient

31 March 2020

1 reference

Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution

31 March 2020

1 reference

Somatic alterations in the human cancer genome

31 March 2020

1 reference

Gefitinib versus cisplatin plus docetaxel in patients with non-small-cell lung cancer harbouring mutations of the epidermal growth factor receptor (WJTOG3405): an open label, randomised phase 3 trial

31 March 2020

1 reference

Gefitinib or carboplatin-paclitaxel in pulmonary adenocarcinoma

31 March 2020

1 reference

Screening for epidermal growth factor receptor mutations in lung cancer

31 March 2020

1 reference

31 March 2020

1 reference

Sensitive mutation detection in heterogeneous cancer specimens by massively parallel picoliter reactor sequencing

31 March 2020

1 reference

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

31 March 2020

1 reference

Clonal integration of a polyomavirus in human Merkel cell carcinoma

31 March 2020

1 reference

Adding pathogens by genomic subtraction

31 March 2020

1 reference

Identification of foreign gene sequences by transcript filtering against the human genome

31 March 2020

1 reference

High-resolution mapping of copy-number alterations with massively parallel sequencing

31 March 2020

1 reference

Comment on "The consensus coding sequences of human breast and colorectal cancers".

31 March 2020

1 reference

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

31 March 2020

1 reference

Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing

31 March 2020

1 reference

The isolation of nucleic acids from fixed, paraffin-embedded tissues-which methods are useful when?

31 March 2020

1 reference

Using next-generation sequencing for high resolution multiplex analysis of copy number variation from nanogram quantities of DNA from formalin-fixed paraffin-embedded specimens

31 March 2020

1 reference

31 March 2020

Assessing EGFR mutations

1 reference

Inferring tumor progression from genomic heterogeneity

31 March 2020

1 reference

Genome remodelling in a basal-like breast cancer metastasis and xenograft

31 March 2020

1 reference

Next-generation DNA sequencing

31 March 2020

1 reference

Generations of sequencing technologies

31 March 2020

1 reference

Genome-wide identification of DNA-protein interactions using chromatin immunoprecipitation coupled with flow cell sequencing

31 March 2020

1 reference

Complex landscapes of somatic rearrangement in human breast cancer genomes

31 March 2020

1 reference

Chromosome translocations: dangerous liaisons revisited

31 March 2020

1 reference

Broken genes in solid tumours

31 March 2020

1 reference

Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.

31 March 2020

1 reference

Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer

31 March 2020

1 reference

LINE-1 retrotransposition activity in human genomes

31 March 2020

1 reference

Mobile interspersed repeats are major structural variants in the human genome

31 March 2020

1 reference

Direct selection of human genomic loci by microarray hybridization

31 March 2020

1 reference

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

31 March 2020

1 reference

Genome-wide in situ exon capture for selective resequencing

31 March 2020

1 reference

Massively parallel exon capture and library-free resequencing across 16 genomes

31 March 2020

1 reference

Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts

31 March 2020

1 reference

Mutations of the BRAF gene in human cancer

31 March 2020

1 reference

EGFR mutations in lung cancer: correlation with clinical response to gefitinib therapy

31 March 2020

1 reference

Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib

31 March 2020

1 reference

EGF receptor gene mutations are common in lung cancers from "never smokers" and are associated with sensitivity of tumors to gefitinib and erlotinib

31 March 2020

1 reference

Lung cancer: intragenic ERBB2 kinase mutations in tumours

31 March 2020

1 reference

A unique clonal JAK2 mutation leading to constitutive signalling causes polycythaemia vera

31 March 2020

1 reference

A gain-of-function mutation of JAK2 in myeloproliferative disorders

31 March 2020

1 reference

Activating mutation in the tyrosine kinase JAK2 in polycythemia vera, essential thrombocythemia, and myeloid metaplasia with myelofibrosis

31 March 2020

1 reference

Identification of an acquired JAK2 mutation in polycythemia vera

31 March 2020

1 reference

Drug-sensitive FGFR2 mutations in endometrial carcinoma

31 March 2020

1 reference

Frequent activating FGFR2 mutations in endometrial carcinomas parallel germline mutations associated with craniosynostosis and skeletal dysplasia syndromes

31 March 2020

1 reference

Oncogenic mutations of ALK kinase in neuroblastoma

31 March 2020

1 reference

Activating mutations in ALK provide a therapeutic target in neuroblastoma

31 March 2020

1 reference

Somatic and germline activating mutations of the ALK kinase receptor in neuroblastoma

31 March 2020

1 reference

Identification of ALK as a major familial neuroblastoma predisposition gene

31 March 2020

1 reference

High frequency of mutations of the PIK3CA gene in human cancers

31 March 2020

1 reference

Core signaling pathways in human pancreatic cancers revealed by global genomic analyses

31 March 2020

1 reference

An integrated genomic analysis of human glioblastoma multiforme

31 March 2020

1 reference

The consensus coding sequences of human breast and colorectal cancers

31 March 2020

1 reference

The genomic landscapes of human breast and colorectal cancers

31 March 2020

1 reference

Exomic sequencing identifies PALB2 as a pancreatic cancer susceptibility gene

31 March 2020

1 reference

Whole exome capture in solution with 3 Gbp of data

31 March 2020

1 reference

High-throughput oncogene mutation profiling in human cancer

31 March 2020

1 reference

Integrative analysis of the melanoma transcriptome

31 March 2020

1 reference

Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma

31 March 2020

1 reference

Mutation ofFOXL2in Granulosa-Cell Tumors of the Ovary

31 March 2020

1 reference

Next-generation tag sequencing for cancer gene expression profiling

31 March 2020

1 reference

Somatic mutations affect key pathways in lung adenocarcinoma

31 March 2020

1 reference

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors

31 March 2020

1 reference

Predicting deleterious amino acid substitutions

31 March 2020

1 reference

CanPredict: a computational tool for predicting cancer-associated missense mutations

31 March 2020

1 reference

A method and server for predicting damaging missense mutations

31 March 2020

1 reference

Human non-synonymous SNPs: server and survey

31 March 2020

1 reference

Cancer-specific high-throughput annotation of somatic mutations: computational prediction of driver missense mutations

31 March 2020

1 reference

Rules for making human tumor cells

31 March 2020

1 reference

Assessing the significance of chromosomal aberrations in cancer: methodology and application to glioma

31 March 2020

1 reference

The landscape of somatic copy-number alteration across human cancers

31 March 2020

1 reference

Signatures of mutation and selection in the cancer genome

31 March 2020

1 reference

High-resolution analysis of DNA copy number using oligonucleotide microarrays

31 March 2020

1 reference

Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia

31 March 2020

1 reference

Characterizing the cancer genome in lung adenocarcinoma

31 March 2020

1 reference

An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays

31 March 2020

1 reference

Homozygous deletions and chromosome amplifications in human lung carcinomas revealed by single nucleotide polymorphism array analysis

31 March 2020

1 reference

Genomic representations using concatenates of Type IIB restriction endonuclease digestion fragments

31 March 2020

1 reference

31 March 2020

1 reference

Serial analysis of gene expression

31 March 2020

1 reference

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

31 March 2020

1 reference

Development of personalized tumor biomarkers using massively parallel sequencing

31 March 2020

1 reference

Human c-myc onc gene is located on the region of chromosome 8 that is translocated in Burkitt lymphoma cells

31 March 2020

1 reference

A papillomavirus DNA from a cervical carcinoma and its prevalence in cancer biopsy samples from different geographic regions

31 March 2020

1 reference

Human transcriptome subtraction by using short sequence tags to search for tumor viruses in conjunctival carcinoma

31 March 2020

1 reference

Pathogen discovery from human tissue by sequence-based computational subtraction

31 March 2020

1 reference

The Sequence Alignment/Map format and SAMtools

31 March 2020

1 reference

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

31 March 2020

1 reference

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

31 March 2020

1 reference

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

31 March 2020

1 reference

Fast and accurate short read alignment with Burrows-Wheeler transform

31 March 2020

1 reference

Fast and accurate long-read alignment with Burrows-Wheeler transform

31 March 2020

1 reference

SSAHA: a fast search method for large DNA databases

31 March 2020

1 reference

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

31 March 2020

1 reference

SOAP2: an improved ultrafast tool for short read alignment

31 March 2020

1 reference

SHRiMP: accurate mapping of short color-space reads

31 March 2020

1 reference

BFAST: an alignment tool for large scale genome resequencing

31 March 2020

1 reference

Allele-specific amplification in cancer revealed by SNP array analysis

31 March 2020

1 reference

Detection of mutations in EGFR in circulating lung-cancer cells

31 March 2020

1 reference

A faster circular binary segmentation algorithm for the analysis of array CGH data

31 March 2020

1 reference

Determinants of protein function revealed by combinatorial entropy optimization

31 March 2020

1 reference

Circos: an information aesthetic for comparative genomics

31 March 2020

1 reference

EGFR and K-ras mutation analysis in non-small cell lung cancer: comparison of paraffin embedded versus frozen specimens.

31 March 2020

1 reference

https://pubmed.ncbi.nlm.nih.gov/20847746

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Acquired mutation of the tyrosine kinase JAK2 in human myeloproliferative disorders

1 reference

https://pubmed.ncbi.nlm.nih.gov/20847746

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20847746

22 May 2017

Consolidated OpenCitations Corpus – April 2017

Dimensions Publication ID

1017741162

0 references

1 reference

Consolidated OpenCitations Corpus – April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20847746

PubMed publication ID

2 references

22 May 2017

Consolidated OpenCitations Corpus – April 2017