Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8. (Q27933975)

PubMed

1 December 2016

title

Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8. (English)

1 reference

PubMed

Ubiquitin-specific protease UBP8 YMR223W

1 December 2016

main subject

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GOA release 2020-03-11

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8

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Shelley L. Berger

object named as

Shelley L Berger

10

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Lorraine Pillus

7

object named as

Lorraine Pillus

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author name string

Karl W Henry

1

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Anastasia Wyce

2

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Wan-Sheng Lo

3

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Laura J Duggan

4

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N C Tolga Emre

5

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Cheng-Fu Kao

6

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Mary Ann Osley

9

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publication date

1 November 2003

0 references

language of work or name

0 references

1 reference

The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p

1 December 2016

volume

17

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issue

21

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page(s)

2648-63

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

The Rtf1 component of the Paf1 transcriptional elongation complex is required for ubiquitination of histone H2B.

20 March 2017

1 reference

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The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation

20 March 2017

1 reference

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The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter

20 March 2017

1 reference

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A conserved RING finger protein required for histone H2B monoubiquitination and cell size control.

20 March 2017

1 reference

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Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde

20 March 2017

1 reference

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The novel SLIK histone acetyltransferase complex functions in the yeast retrograde response pathway.

20 March 2017

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SALSA, a variant of yeast SAGA, contains truncated Spt7, which correlates with activated transcription

20 March 2017

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Analysis of Spt7 function in the Saccharomyces cerevisiae SAGA coactivator complex.

20 March 2017

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Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases

20 March 2017

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Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry

20 March 2017

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Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

20 March 2017

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Functional organization of the yeast proteome by systematic analysis of protein complexes

20 March 2017

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Histone H3 specific acetyltransferases are essential for cell cycle progression

20 March 2017

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The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4.

20 March 2017

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Analysis of the deubiquitinating enzymes of the yeast Saccharomyces cerevisiae

20 March 2017

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The something about silencing protein, Sas3, is the catalytic subunit of NuA3, a yTAF(II)30-containing HAT complex that interacts with the Spt16 subunit of the yeast CP (Cdc68/Pob3)-FACT complex

20 March 2017

1 reference

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The language of covalent histone modifications

20 March 2017

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Inhibition of TATA-binding protein function by SAGA subunits Spt3 and Spt8 at Gcn4-activated promoters

7 April 2017

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The human TFIID components TAF(II)135 and TAF(II)20 and the yeast SAGA components ADA1 and TAF(II)68 heterodimerize to form histone-like pairs

20 March 2017

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The ADA complex is a distinct histone acetyltransferase complex in Saccharomyces cerevisiae

20 March 2017

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20 March 2017

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Functional organization of the yeast SAGA complex: distinct components involved in structural integrity, nucleosome acetylation, and TATA-binding protein interaction.

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

A Subset of TAFIIs Are Integral Components of the SAGA Complex Required for Nucleosome Acetylation and Transcriptional Stimulation

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: characterization of an Ada complex and the SAGA (Spt/Ada) complex

20 March 2017

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ADR1 activation domains contact the histone acetyltransferase GCN5 and the core transcriptional factor TFIIB.

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

The tandem affinity purification (TAP) method: a general procedure of protein complex purification

20 March 2017

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Dissecting the regulatory circuitry of a eukaryotic genome

20 March 2017

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Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

SAGA is an essential in vivo target of the yeast acidic activator Gal4p

20 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

Active genes are tri-methylated at K4 of histone H3

7 April 2017

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Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II

7 April 2017

1 reference

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Dot1p modulates silencing in yeast by methylation of the nucleosome core

7 April 2017

1 reference

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Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast

7 April 2017

1 reference

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Methylation of histone H3 Lys 4 in coding regions of active genes

7 April 2017

1 reference

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Rad6-dependent ubiquitination of histone H2B in yeast

7 April 2017

1 reference

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Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries

7 April 2017

1 reference

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7 April 2017

1 reference

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29 September 2017

1 reference

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Lysine-79 of histone H3 is hypomethylated at silenced loci in yeast and mammalian cells: a potential mechanism for position-effect variegation

29 September 2017

1 reference

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29 September 2017

1 reference

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29 September 2017

1 reference

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29 September 2017

1 reference

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29 September 2017

1 reference

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1 reference

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The E2 ubiquitin conjugase Rad6 is required for the ArgR/Mcm1 repression of ARG1 transcription

29 September 2017

1 reference

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29 September 2017

1 reference

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Histone folds mediate selective heterodimerization of yeast TAF(II)25 with TFIID components yTAF(II)47 and yTAF(II)65 and with SAGA component ySPT7.

29 September 2017

1 reference

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29 September 2017

1 reference

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29 September 2017

1 reference

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29 September 2017

1 reference

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29 September 2017

1 reference

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Reversible histone modification and the chromosome cell cycle

29 September 2017

1 reference

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29 September 2017

1 reference

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The RAD6 protein of Saccharomyces cerevisiae polyubiquitinates histones, and its acidic domain mediates this activity

2 June 2018

1 reference

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Ubiquitinated histone H2B is preferentially located in transcriptionally active chromatin

2 June 2018

1 reference

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Level of ubiquitinated histone H2B in chromatin is coupled to ongoing transcription

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

RAD6 gene product of Saccharomyces cerevisiae requires a putative ubiquitin protein ligase (E3) for the ubiquitination of certain proteins.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

Nucleosomes unfold completely at a transcriptionally active promoter

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

Requirement of Hos2 histone deacetylase for gene activity in yeast

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

Evidence that Set1, a factor required for methylation of histone H3, regulates rDNA silencing in S. cerevisiae by a Sir2-independent mechanism

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

Correlation between histone lysine methylation and developmental changes at the chicken beta-globin locus

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

Regulation of transcriptional activation domain function by ubiquitin

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

Transcriptional activation by yeast PDR1p is inhibited by its association with NGG1p/ADA3p

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615

27 November 2018

Identifiers

DOI

10.1101/GAD.1144003

1 reference

1 reference

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