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Exosome nuclease subunit RRP6 YOR001W (Q27551691)

From Wikidata
fungal protein found in Saccharomyces cerevisiae S288c
  • RRP6
  • exosome nuclease subunit RRP6
  • YOR001W
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    English
    Exosome nuclease subunit RRP6 YOR001W
    fungal protein found in Saccharomyces cerevisiae S288c
    • RRP6
    • exosome nuclease subunit RRP6
    • YOR001W

    Statements

    molecular function
    cell component
    biological process
    U4 snRNA 3'-end processing
    determination method or standard
    IMP
    IGI
    5 references
    retrieved
    9 May 2019
    stated in
    Contributions of Trf4p- and Trf5p-dependent polyadenylation to the processing and degradative functions of the yeast nuclear exosome
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Functions of the exosome in rRNA, snoRNA and snRNA synthesis
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IGI
    retrieved
    9 May 2019
    stated in
    Functions of the exosome in rRNA, snoRNA and snRNA synthesis
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IGI
    nuclear polyadenylation-dependent rRNA catabolic process
    determination method or standard
    IMP
    IGI
    7 references
    retrieved
    14 February 2019
    stated in
    Trf4 targets ncRNAs from telomeric and rDNA spacer regions and functions in rDNA copy number control
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    14 February 2019
    stated in
    The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    14 February 2019
    stated in
    5-fluorouracil enhances exosome-dependent accumulation of polyadenylated rRNAs
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    14 February 2019
    stated in
    Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA.
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    14 February 2019
    stated in
    Evidence for core exosome independent function of the nuclear exoribonuclease Rrp6p
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    14 February 2019
    stated in
    Polyadenylation of rRNA in Saccharomyces cerevisiae.
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    14 February 2019
    stated in
    Surveillance of nuclear-restricted pre-ribosomes within a subnucleolar region of Saccharomyces cerevisiae
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IGI
    exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
    determination method or standard
    IBA
    IMP
    5 references
    retrieved
    9 May 2019
    stated in
    Evidence for core exosome independent function of the nuclear exoribonuclease Rrp6p
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Rrp6p, the Yeast Homologue of the Human PM-Scl 100-kDa Autoantigen, Is Essential for Efficient 5.8 S rRNA 3′ End Formation
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Functions of the exosome in rRNA, snoRNA and snRNA synthesis
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
    GOA
    curator
    GO Central
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IBA
    nuclear polyadenylation-dependent rRNA catabolic process
    determination method or standard
    IBA
    IGI
    IMP
    8 references
    retrieved
    9 May 2019
    stated in
    5-fluorouracil enhances exosome-dependent accumulation of polyadenylated rRNAs
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Trf4 targets ncRNAs from telomeric and rDNA spacer regions and functions in rDNA copy number control
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Evidence for core exosome independent function of the nuclear exoribonuclease Rrp6p
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Polyadenylation of rRNA in Saccharomyces cerevisiae.
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA.
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Surveillance of nuclear-restricted pre-ribosomes within a subnucleolar region of Saccharomyces cerevisiae
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IGI
    retrieved
    9 May 2019
    stated in
    Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
    GOA
    curator
    GO Central
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IBA
    nuclear polyadenylation-dependent CUT catabolic process
    determination method or standard
    IBA
    IGI
    IMP
    5 references
    retrieved
    9 May 2019
    stated in
    Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3.
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Trf4 targets ncRNAs from telomeric and rDNA spacer regions and functions in rDNA copy number control
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005527
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IGI
    retrieved
    9 May 2019
    stated in
    Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
    GOA
    curator
    GO Central
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q12149
    determination method or standard
    IBA

    Identifiers

     
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