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Rpd3L histone deacetylase complex subunit DEP1 YAL013W (Q27549063)

From Wikidata

fungal protein found in Saccharomyces cerevisiae S288c

Rpd3L histone deacetylase complex subunit DEP1
DEP1
YAL013W

Language	Label	Description	Also known as
default for all languages	No label defined
English	Rpd3L histone deacetylase complex subunit DEP1 YAL013W	fungal protein found in Saccharomyces cerevisiae S288c	Rpd3L histone deacetylase complex subunit DEP1 DEP1 YAL013W

Statements

1 reference

25 May 2022

UniProt protein ID

1 reference

10 December 2016

Saccharomyces cerevisiae S288c

1 reference

25 May 2022

UniProt protein ID

1 reference

25 May 2022

UniProt protein ID

molecular function

histone deacetylase activity

determination method or standard

1 reference

14 February 2019

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

histone deacetylase binding

determination method or standard

1 reference

14 February 2019

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

molecular function

determination method or standard

1 reference

14 February 2019

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

protein binding

determination method or standard

3 references

21 June 2018

Defining the budding yeast chromatin‐associated interactome

IntAct protein interaction database

http://www.ebi.ac.uk/QuickGO/annotations?protein=P31385&geneProductId=UniProtKB:P31385

determination method or standard

21 June 2018

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

IntAct protein interaction database

http://www.ebi.ac.uk/QuickGO/annotations?protein=P31385&geneProductId=UniProtKB:P31385

determination method or standard

21 June 2018

Proteome survey reveals modularity of the yeast cell machinery

IntAct protein interaction database

http://www.ebi.ac.uk/QuickGO/annotations?protein=P31385&geneProductId=UniProtKB:P31385

determination method or standard

determination method or standard

1 reference

14 February 2019

UniProt protein ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

determination method or standard

1 reference

14 February 2019

UniProt protein ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

determination method or standard

3 references

10 September 2018

Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?protein=P31385&geneProductId=UniProtKB:P31385

determination method or standard

10 September 2018

Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?protein=P31385&geneProductId=UniProtKB:P31385

determination method or standard

10 September 2018

Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?protein=P31385&geneProductId=UniProtKB:P31385

determination method or standard

Sin3-type complex

determination method or standard

1 reference

14 February 2019

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

determination method or standard

4 references

14 February 2019

Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

14 February 2019

Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

14 February 2019

Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

14 February 2019

Chromatin Central: towards the comparative proteome by accurate mapping of the yeast proteomic environment

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

Rpd3L-Expanded complex

determination method or standard

1 reference

14 February 2019

Chromatin Central: towards the comparative proteome by accurate mapping of the yeast proteomic environment

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

biological process

transcription, DNA-templated

determination method or standard

1 reference

21 June 2018

UniProt protein ID

http://www.ebi.ac.uk/QuickGO/annotations?protein=P31385&geneProductId=UniProtKB:P31385

determination method or standard

positive regulation of transcription by RNA polymerase II

determination method or standard

1 reference

14 February 2019

The Rpd3L HDAC complex is essential for the heat stress response in yeast.

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

negative regulation of ribosomal DNA heterochromatin assembly

determination method or standard

1 reference

14 February 2019

Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

regulation of transcription by RNA polymerase II

determination method or standard

2 references

14 February 2019

Isolation and characterization of a mutant of Saccharomyces cerevisiae with pleiotropic deficiencies in transcriptional activation and repression.

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

14 February 2019

Histone H3 Lysine 4 Hypermethylation Prevents Aberrant Nucleosome Remodeling at the PHO5 Promoter

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

negative regulation of transcription by RNA polymerase II

determination method or standard

2 references

regulation of DNA-dependent DNA replication initiation

determination method or standard

1 reference

14 February 2019

Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

negative regulation of silent mating-type cassette heterochromatin assembly

determination method or standard

1 reference

14 February 2019

Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

positive regulation of transcription from RNA polymerase II promoter in response to heat stress

determination method or standard

1 reference

14 February 2019

The Rpd3L HDAC complex is essential for the heat stress response in yeast.

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

regulation of transcription, DNA-templated

determination method or standard

1 reference

21 June 2018

UniProt protein ID

http://www.ebi.ac.uk/QuickGO/annotations?protein=P31385&geneProductId=UniProtKB:P31385

determination method or standard

histone deacetylation

determination method or standard

3 references

21 June 2018

Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?protein=P31385&geneProductId=UniProtKB:P31385

determination method or standard

21 June 2018

Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?protein=P31385&geneProductId=UniProtKB:P31385

determination method or standard

21 June 2018

Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?protein=P31385&geneProductId=UniProtKB:P31385

determination method or standard

chromatin organization

determination method or standard

1 reference

14 February 2019

UniProt protein ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

negative regulation of transcription by RNA polymerase II

determination method or standard

3 references

14 February 2019

Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

14 February 2019

The roles of the catalytic and noncatalytic activities of Rpd3L and Rpd3S in the regulation of gene transcription in yeast

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

14 February 2019

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

histone deacetylation

determination method or standard

4 references

14 February 2019

Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

14 February 2019

Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

14 February 2019

Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex

Saccharomyces Genome Database ID

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

14 February 2019

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P31385

determination method or standard

Identifiers

RefSeq protein ID

1 reference

20 March 2022

UniProt protein ID

1 reference

25 May 2022

UniProt protein ID

Ensembl protein ID

1 reference

ensembl Release 106

Ensembl protein ID

Saccharomyces Genome Database ID

1 reference

20 March 2022

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

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