Growth control of the eukaryote cell: a systems biology study in yeast (Q27499776)

16077

(RS)-pyroglutamic acid

1 reference

1 reference

1 reference

16467

adenosine monophosphate

1 reference

1 reference

(RS)-3-phosphoglyceric acid

18391

1 reference

1 reference

1 reference

65083

D-threo-isocitric acid

1 reference

1 reference

1 reference

1 reference

2 references

2,4-dimethylbenzoic acid

1 reference

64811

N-acetyl-L-glutamic acid

2 references

S-adenosyl-L-homocysteine

1 reference

1 reference

1 reference

30997

3-palmitoyl-sn-glycerol

1 reference

1 reference

1 reference

1 reference

1 reference

(RS)-2-hydroxypentanoic acid

4170

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

15356

2-hydroxyglutaric acid

1 reference

1 reference

1 reference

1 reference

1 reference

4167

3-methyl-1,2-butanediol

1 reference

1 reference

1 reference

1 reference

1 reference

N-carbamoyl-L-aspartic acid

15741

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

1 reference

16109

inositol monophosphate

1 reference

1 reference

1 reference

1 reference

52682

(S)-pyroglutamic acid

1 reference

1 reference

3,4-methylenedioxymandelic acid

59783

1 reference

1 reference

2-(2-hydroxyphenyl)ethanol

29571

1 reference

1 reference

1 reference

1 reference

1 reference

17754

alpha,alpha-trehalose

1 reference

1 reference

1 reference

1 reference

30746

2-isopropylmalic acid

1 reference

28635

S-adenosyl-L-methionine

1 reference

1 reference

1 reference

1 reference

1 reference

5-hydroxyfuran-2-carboxylic acid

32398

2 references

1 reference

1 reference

1 reference

1D-myo-inositol 6-phosphate

64762

1 reference

64838

Saccharomyces cerevisiae

1 reference

1 reference

Sarah R Hart

18

0 references

Peter Li

Peter Li

20

0 references

Nianshu Zhang

Nianshu Zhang

4

0 references

David I Broadhurst

David Broadhurst

14

0 references

Warwick Dunn

Warwick B Dunn

13

0 references

Norman Paton

Norman W Paton

22

0 references

Douglas Kell

Douglas B Kell

24

0 references

Andrew Hayes

Andrew Hayes

5

0 references

Neil Swainston

19

Neil Swainston

0 references

Kathryn Lilley

23

Kathryn S Lilley

0 references

author name string

Juan I Castrillo

1

0 references

Leo A Zeef

2

0 references

David C Hoyle

3

0 references

David C J Gardner

6

0 references

Michael J Cornell

7

0 references

June Petty

8

0 references

Luke Hakes

9

0 references

Leanne Wardleworth

10

0 references

Bharat Rash

11

0 references

Marie Brown

12

0 references

Kerry O'Donoghue

15

0 references

Svenja S Hester

16

0 references

Tom P J Dunkley

17

0 references

Simon J Gaskell

21

0 references

Stephen G Oliver

25

0 references

publication date

2007

0 references

language of work or name

English

1 reference

https://jbiol.biomedcentral.com/track/pdf/10.1186/jbiol54

inferred from title

work available at URL

1 reference

26 April 2024

https://api.unpaywall.org/v2/10.1186/jbiol54?email=unpaywall_01@example.com

1 reference

6

0 references

issue

2

0 references

page(s)

4

0 references

1 reference

26 April 2024

https://api.unpaywall.org/v2/10.1186/jbiol54?email=unpaywall_01@example.com

access restriction status

open access

1 reference

inferred from online access status

cites work

i-Tracker: for quantitative proteomics using iTRAQ.

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Genome-wide requirements for resistance to functionally distinct DNA-damaging agents

20 March 2017

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Dissecting eukaryotic translation and its control by ribosome density mapping

20 March 2017

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Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD)

20 March 2017

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Extractor for ESI quadrupole TOF tandem MS data enabled for high throughput batch processing

20 March 2017

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Comparing protein abundance and mRNA expression levels on a genomic scale

20 March 2017

1 reference

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Gene ontology: tool for the unification of biology

20 March 2017

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Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

20 March 2017

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Metabolism of sulfur amino acids in Saccharomyces cerevisiae

20 March 2017

1 reference

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Functional profiling of the Saccharomyces cerevisiae genome

20 March 2017

1 reference

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Genomic expression programs in the response of yeast cells to environmental changes

20 March 2017

1 reference

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Nutrient regulates Tor1 nuclear localization and association with rDNA promoter.

20 March 2017

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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

20 March 2017

1 reference

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Proteome survey reveals modularity of the yeast cell machinery

20 March 2017

1 reference

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Ribosome occupancy of the yeast CPA1 upstream open reading frame termination codon modulates nonsense-mediated mRNA decay

20 March 2017

1 reference

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TOR regulates ribosomal protein gene expression via PKA and the Forkhead transcription factor FHL1.

20 March 2017

1 reference

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Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1.

20 March 2017

1 reference

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Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression

20 March 2017

1 reference

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TOR complex 1 includes a novel component, Tco89p (YPL180w), and cooperates with Ssd1p to maintain cellular integrity in Saccharomyces cerevisiae

20 March 2017

1 reference

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Systematic identification of pathways that couple cell growth and division in yeast

20 March 2017

1 reference

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The TOR-controlled transcription activators GLN3, RTG1, and RTG3 are regulated in response to intracellular levels of glutamine

20 March 2017

1 reference

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Reverse methionine biosynthesis from S-adenosylmethionine in eukaryotic cells

20 March 2017

1 reference

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Identification in Saccharomyces cerevisiae of two isoforms of a novel mitochondrial transporter for 2-oxoadipate and 2-oxoglutarate

20 March 2017

1 reference

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Polyglutamylation of folate coenzymes is necessary for methionine biosynthesis and maintenance of intact mitochondrial genome in Saccharomyces cerevisiae

20 March 2017

1 reference

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TOR controls translation initiation and early G1 progression in yeast

20 March 2017

1 reference

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Role of the GATA factors Gln3p and Nil1p of Saccharomyces cerevisiae in the expression of nitrogen-regulated genes

20 March 2017

1 reference

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The economics of ribosome biosynthesis in yeast

20 March 2017

1 reference

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Checkpoints: controls that ensure the order of cell cycle events

20 March 2017

1 reference

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A computational screen for methylation guide snoRNAs in yeast

20 March 2017

1 reference

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Correlation between protein and mRNA abundance in yeast

20 March 2017

1 reference

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S6K1- and betaTRCP-mediated degradation of PDCD4 promotes protein translation and cell growth

20 March 2017

1 reference

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Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies

20 March 2017

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Difference gel electrophoresis. A single gel method for detecting changes in protein extracts

20 March 2017

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20 March 2017

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Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

20 March 2017

1 reference

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Systems biology: a brief overview

7 April 2017

1 reference

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The TOR pathway: a target for cancer therapy

7 April 2017

1 reference

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Target of rapamycin (TOR): an integrator of nutrient and growth factor signals and coordinator of cell growth and cell cycle progression

7 April 2017

1 reference

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Pre-ribosomes on the road from the nucleolus to the cytoplasm

7 April 2017

1 reference

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Subcellular localization of the yeast proteome

7 April 2017

1 reference

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Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins

7 April 2017

1 reference

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From in vivo to in silico biology and back

7 April 2017

1 reference

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MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics

29 September 2017

1 reference

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Proteome analysis of yeast response to various nutrient limitations

29 September 2017

1 reference

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Integrative investigation of metabolic and transcriptomic data

29 September 2017

1 reference

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S-adenosylmethionine: jack of all trades and master of everything?

29 September 2017

1 reference

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Unraveling the complexity of flux regulation: a new method demonstrated for nutrient starvation in Saccharomyces cerevisiae

29 September 2017

1 reference

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Continuous culture--making a comeback?

29 September 2017

1 reference

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The next wave in metabolome analysis

29 September 2017

1 reference

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Post-transcriptional control of gene expression: a genome-wide perspective.

29 September 2017

1 reference

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Metabolic footprinting and systems biology: the medium is the message

29 September 2017

1 reference

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Uncovering transcriptional regulation of metabolism by using metabolic network topology

29 September 2017

1 reference

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How cells coordinate growth and division

29 September 2017

1 reference

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Translational profiling: the genome-wide measure of the nascent proteome.

29 September 2017

1 reference

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Bow ties, metabolism and disease

29 September 2017

1 reference

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Integrated genomic and proteomic analyses of gene expression in Mammalian cells

29 September 2017

1 reference

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Global analysis of nutrient control of gene expression in Saccharomyces cerevisiae during growth and starvation.

29 September 2017

1 reference

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Autophagy in Yeast: ATOR-Mediated Response to Nutrient Starvation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Yeast TOR Signaling: A Mechanism for Metabolic Regulation

29 September 2017

1 reference

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Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae

29 September 2017

1 reference

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Dynamics of protein turnover, a missing dimension in proteomics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

The genomics of yeast responses to environmental stress and starvation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Nitrogen regulation in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Functional genomics: lessons from yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Carbon- and nitrogen-quality signaling to translation are mediated by distinct GATA-type transcription factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Structure-function analysis of yeast mRNA cap methyltransferase and high-copy suppression of conditional mutants by AdoMet synthase and the ubiquitin conjugating enzyme Cdc34p

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Control-mechanisms acting at the transcriptional and post-transcriptional levels are involved in the synthesis of the arginine pathway carbamoylphosphate synthase of yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Regulation by nutrient limitation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Three Regulatory Systems Control Production of Glutamine Synthetase in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Coordinate expression of ribosomal protein genes in yeast as a function of cellular growth rate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Evolutionarily conserved features of the arginine attenuator peptide provide the necessary requirements for its function in translational regulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Suitability of replacement markers for functional analysis studies inSaccharomyces cerevisiae

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Regulation of ribosome synthesis in yeast

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

From gene to screen with yeast

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

The sequence of a 36 kb segment on the left arm of yeast chromosome X identifies 24 open reading frames including NUC1, PRP21 (SPP91), CDC6, CRY2, the gene for S24, a homologue to the aconitase gene ACO1 and two homologues to chromosome III genes

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Control theory of regulatory cascades

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

A cultural divide on the use of chemostats

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Theodor Bücher Lecture. Metabolomics, modelling and machine learning in systems biology - towards an understanding of the languages of cells. Delivered on 3 July 2005 at the 30th FEBS Congress and the 9th IUBMB conference in Budapest

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Genome-wide expression analysis of yeast response during exposure to 4 degrees C.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Purification and properties of cobalamin-independent methionine synthase from Candida albicans and Saccharomyces cerevisiae

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Identification and characterization of upstream open reading frames (uORF) in the 5' untranslated regions (UTR) of genes in Saccharomyces cerevisiae

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Control of MAPK signalling: from complexity to what really matters

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Hierarchical and metabolic regulation of glucose influx in starved Saccharomyces cerevisiae.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

A proposed framework for the description of plant metabolomics experiments and their results

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Determining a significant change in protein expression with DeCyder during a pair-wise comparison using two-dimensional difference gel electrophoresis

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Homodirectional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

High-throughput classification of yeast mutants for functional genomics using metabolic footprinting

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Transcriptome meets metabolome: hierarchical and metabolic regulation of the glycolytic pathway

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373899

Proteolysis: from the lysosome to ubiquitin and the proteasome

27 November 2018

1 reference

12 December 2020

Systems biology: understanding cells

1 reference

12 December 2020

Yield and maintenance analysis in the chemostat; a tool for metabolic studies of growing cells

1 reference

12 December 2020

Studies on compartmentation of S-adenosyl-L-methionine in Saccharomyces cerevisiae and isolated rat hepatocytes

1 reference

12 December 2020

Folylpoly-gamma-glutamate synthetases: properties and regulation

1 reference

12 December 2020

The synthesis of the two S-adenosyl-methionine synthetases is differently regulated in Saccharomyces cerevisiae

1 reference

12 December 2020

Translation control: bridging the gap between genomics and proteomics?

1 reference

12 December 2020

Hybridization array technology coupled with chemostat culture: Tools to interrogate gene expression in Saccharomyces cerevisiae

1 reference

12 December 2020

An optimized protocol for metabolome analysis in yeast using direct infusion electrospray mass spectrometry

1 reference

12 December 2020

1 reference

12 December 2020

Metabolism of sulfur amino acids in Saccharomyces cerevisiae

1 reference

COCI

https://opencitations.net/index/api/v1/citations/10.1128/MMBR.61.4.503-532.1997

30 June 2024

Identifiers

DOI

10.1186/JBIOL54

1 reference

Dimensions publication ID

1012093526

0 references

1 reference

1 reference

PubMed publication ID

17439666

1 reference